YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259462, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259462, gi|....

Description	E-value	Query Range	Subject Range
GLCU_BACC1 - Probable glucose uptake protein GlcU OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=glcU PE=3 S...	6.0E-86	[1..285]	[1..285]
GLCU_BACCR - Probable glucose uptake protein GlcU OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBR...	2.0E-85	[1..285]	[2..286]
gi\|218544040, gi... - gi\|218899874\|ref\|YP_002448285.1\| glucose uptake protein [Bacillus cereus G9842], gi\|218544040\|gb\|ACK... gi\|75760849, gi\|... - gi\|75760849\|ref\|ZP_00740864.1\| Glucose uptake protein [Bacillus thuringiensis serovar israelensis AT... gi\|228903238, gi... - gi\|228903238\|ref\|ZP_04067371.1\| sugar uptake protein [Bacillus thuringiensis IBL 4222], gi\|228856412...	3.0E-85	[1..285]	[1..285]
gi\|89204213, gi\|... - gi\|89204213\|ref\|ZP_01182791.1\| RhaT l-rhamnose-proton symport [Bacillus weihenstephanensis KBAB4], g... gi\|229013924, gi... - gi\|229013924\|ref\|ZP_04171051.1\| sugar uptake protein [Bacillus mycoides DSM 2048], gi\|228747394\|gb\|E...	6.0E-84	[1..284]	[1..284]
gi\|52140786, gi\|... - gi\|52140786\|ref\|YP_086044.1\| glucose uptake protein [Bacillus cereus E33L], gi\|51974255\|gb\|AAU15805....	2.0E-83	[1..285]	[1..285]
gi\|49330358, gi\|... - gi\|49478802\|ref\|YP_038763.1\| glucose uptake protein [Bacillus thuringiensis serovar konkukian str. 9...	6.0E-83	[1..285]	[1..285]
gi\|228771776, gi... - gi\|228987972\|ref\|ZP_04148078.1\| sugar uptake protein [Bacillus thuringiensis serovar tochigiensis BG... gi\|229158328, gi... - gi\|229158328\|ref\|ZP_04286395.1\| sugar uptake protein [Bacillus cereus ATCC 4342], gi\|228625286\|gb\|EE... gi\|47557929, gi\|... - gi\|47565143\|ref\|ZP_00236186.1\| glucose uptake protein [Bacillus cereus G9241], gi\|47557929\|gb\|EAL162...	8.0E-83	[1..285]	[1..285]
gi\|152977079, gi... - gi\|89201287\|ref\|ZP_01180032.1\| RhaT l-rhamnose-proton symport [Bacillus cereus subsp. cytotoxis NVH ...	1.0E-78	[1..284]	[1..284]
gi\|221321728 - gi\|221321728\|ref\|ZP_03603022.1\| glucose uptake [Bacillus subtilis subsp. subtilis str. SMY] GLCU_BACSU - Glucose uptake protein glcU OS=Bacillus subtilis GN=glcU PE=2 SV=2 GLCU_BACSU - Glucose uptake protein GlcU OS=Bacillus subtilis (strain 168) GN=glcU PE=2 SV=2 gi\|221312529 - gi\|221312529\|ref\|ZP_03594334.1\| glucose uptake [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|221317466 - gi\|221317466\|ref\|ZP_03598760.1\| glucose uptake [Bacillus subtilis subsp. subtilis str. JH642]	5.0E-78	[1..285]	[1..285]
gi\|227855988, gi... - gi\|227895731\|ref\|ZP_04013536.1\| DMT superfamily drug/metabolite transporter [Lactobacillus plantarum... gi\|254557182, gi... - gi\|254557182\|ref\|YP_003063599.1\| sugar transport protein [Lactobacillus plantarum JDM1], gi\|25404610... YP03_LACPL, Y250... - (Q88UI3) Putative sugar uptake protein lp_2503, Putative sugar uptake protein lp_2503 OS=Lactobacill... Y2503_LACPL - Putative sugar uptake protein lp_2503 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 /...	5.0E-78	[1..285]	[1..285]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFLAILPA IFWGSIVLFN VKLGGGPYSQ TLGTTFGALI FSIVVYIFMK PVLTPTVIGV  60
   61 GIVSGLFWAL GQANQLKSID LMGVSRTMPI STGLQLVSTT LFGVIVFHEW STIISVVLGV 120
  121 LALVCIIIGV ILTSLQSEEE KNAEQAGNFK RGIIILLIST VGYLVYVVVI RLFN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.920819
Match:	PF06800.3
Description:	No description for PF06800.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDGWSALLPQ AVGMVLGGIL LTFKHHPFNK YAIRNIIPGL IWAAGNMFLF ISQPRVGVAT  60
   61 SFSLSQMGII ISTLGGILIL GERKTKRQLT GIVVGIVFII AAGIMLGIAK S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.04
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits