YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259289, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259289, gi|....

Description	E-value	Query Range	Subject Range
gi\|51974412, gi\|... - gi\|52140943\|ref\|YP_085884.1\| 23S rRNA methyltransferase [Bacillus cereus E33L], gi\|51974412\|gb\|AAU15...	7.0E-68	[1..245]	[1..245]
gi\|89200376, gi\|... - gi\|89200376\|ref\|ZP_01179130.1\| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp. cytotoxis ...	7.0E-68	[1..245]	[1..245]
gi\|30022637, gi\|... - gi\|30022637\|ref\|NP_834268.1\| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579], gi\|29898195\|gb...	2.0E-67	[1..245]	[1..245]
gi\|49478690, gi\|... - gi\|49478690\|ref\|YP_038610.1\| 23S rRNA methyltransferase [Bacillus thuringiensis serovar konkukian st...	3.0E-67	[1..245]	[1..245]
gi\|42783734, gi\|... - gi\|42783734\|ref\|NP_980981.1\| RNA methyltransferase [Bacillus cereus ATCC 10987], gi\|42739664\|gb\|AAS4...	3.0E-67	[1..245]	[1..245]
gi\|89156830, gi\|... - gi\|89205346\|ref\|ZP_01183917.1\| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis KBAB4...	2.0E-66	[1..245]	[1..245]
gi\|48859745, gi\|... - gi\|67874591\|ref\|ZP_00504301.1\| RNA methyltransferase TrmH, group 3 [Clostridium thermocellum ATCC 27... gi\|196197583, gi... - gi\|196253021\|ref\|ZP_03151665.1\| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellu...	3.0E-65	[1..254]	[1..266]
gi\|89086286, gi\|... - gi\|89098882\|ref\|ZP_01171762.1\| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911], gi\|89086286\|g...	2.0E-64	[1..245]	[1..245]
gi\|75907658, gi\|... - gi\|75907658\|ref\|YP_321954.1\| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413], gi...	6.0E-63	[4..254]	[2..260]
gi\|172058194, gi... - gi\|68055072\|ref\|ZP_00539220.1\| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum 255-15]...	2.0E-62	[1..246]	[1..246]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIDSVQNP RVKQWKKLQT KKERDKKGLF FVEGFHLVEE ALKAGVVTEL IVSDQTDLPK  60
   61 DWTVNDVEMY IVPEAIVKVL RETETTQGVF AVCEKHESEV ALTDGKFLLL DGLQDPGNLG 120
  121 TIIRTADAAG IHAVVLGEGC VDAYNSKVLR STQGSIFHLP IVKGNLKEWV DKLKENNVPV 180
  181 YGTALENGVP YGEVTPAGSF ALIVGNEGNG VRQEILAKTD QNLYIPIYGG AESLNVAVAA 240
  241 GILTYYLQSP VANK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1gz0A
Description:	RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
rRNA methyltransferase activity	1.86192852581774	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: