YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259276, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259276, gi|....

Description	E-value	Query Range	Subject Range
gi\|75762736, gi\|... - gi\|75762736\|ref\|ZP_00742568.1\| Branched chain amino acid transport system II carrier protein [Bacill...	0.0	[1..435]	[6..442]
gi\|29895734, gi\|... - gi\|30020184\|ref\|NP_831815.1\| branched chain amino acid ABC transporter carrier protein [Bacillus cer...	0.0	[1..435]	[1..437]
gi\|89153322, gi\|... - gi\|89208760\|ref\|ZP_01187249.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..434]	[6..441]
gi\|152975342, gi... - gi\|89202735\|ref\|ZP_01181447.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..431]	[21..453]
gi\|51976836, gi\|... - gi\|52143367\|ref\|YP_083462.1\| branched-chain amino acid transport system carrier protein [Bacillus ce...	0.0	[1..435]	[4..440]
gi\|254737098 - gi\|254737098\|ref\|ZP_05194802.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|49184927, gi\|... - gi\|49184927\|ref\|YP_028179.1\| branched-chain amino acid transport system II carrier protein [Bacillus... gi\|254758286 - gi\|254758286\|ref\|ZP_05210313.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254751414 - gi\|254751414\|ref\|ZP_05203451.1\| branched-chain amino acid transport system II carrier protein [Bacil... gi\|254739426 - gi\|254739426\|ref\|ZP_05197125.1\| branched-chain amino acid transport system II carrier protein [Bacil...	0.0	[1..435]	[4..440]
gi\|47777997, gi\|... - gi\|47777997\|ref\|YP_018704.2\| branched chain amino acid ABC transporter carrier protein [Bacillus ant... gi\|30262086, gi\|... - gi\|30262086\|ref\|NP_844463.1\| branched-chain amino acid transport system II carrier protein [Bacillus...	0.0	[1..435]	[1..437]
gi\|49481264, gi\|... - gi\|49481264\|ref\|YP_036209.1\| branched-chain amino acid transport system carrier protein [Bacillus th...	0.0	[1..435]	[4..440]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSLKFSEM FAISLMLFAL FFGAGNMIFP PALGQGAGTD VWIALFGFIV TGVGLPLLGV  60
   61 IVIALKGDIN ELAGRVHPIF ALVFITAIYL CLGVFVSVPR TGTVAYEMSV APFLPSEIAG 120
  121 QSYSLVIFTF IFFAVTFYLA LNPSKLVGRI GKVLTPILLA VIAIIVGKAL ITPIGEFGAP 180
  181 TEAYSAPLFK GFIDGYLTLD GLAALVFGNV VIHALKEKGI TNKNSIAKVT IFAGFIAALG 240
  241 LLLVYLALAY LGASSVSLGM GANGGIILTN VVNHLFGSYG TLLLGIAITA ACLTTSVGIV 300
  301 AACGDYFSSL LPKLSYQKVV FIFCVLAFMV ANLGLTQLNA LALPILIAIY PIGIVLIVLS 360
  361 LVENYVRLP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [370-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAMYVGGIVG AFAISFFDGL HNANLQIAAL APILDKIPLY SVGIGWLVPG IIGIGFGYIV  60
   61 SKFQKQEVAV EK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits