YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49187373, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49187373, gi|....

Description	E-value	Query Range	Subject Range
gi\|196024287, gi... - gi\|196044799\|ref\|ZP_03112033.1\| germination protein gerM [Bacillus cereus 03BB108], gi\|196024287\|gb\|... gi\|196034520, gi... - gi\|196034520\|ref\|ZP_03101929.1\| germination protein gerM [Bacillus cereus W], gi\|195993062\|gb\|EDX570... gi\|51974484, gi\|... - gi\|52141015\|ref\|YP_085814.1\| germination protein [Bacillus cereus E33L], gi\|51974484\|gb\|AAU16034.1\| ... gi\|170688293, gi... - gi\|170688293\|ref\|ZP_02879503.1\| germination protein gerM [Bacillus anthracis str. A0465], gi\|1706677... gi\|225866465, gi... - gi\|225866465\|ref\|YP_002751843.1\| germination protein gerM [Bacillus cereus 03BB102], gi\|225789710\|gb... gi\|167635570, gi... - gi\|167635570\|ref\|ZP_02393882.1\| germination protein gerM [Bacillus anthracis str. A0442], gi\|1675289... gi\|49333061, gi\|... - gi\|49481505\|ref\|YP_038535.1\| germination protein [Bacillus thuringiensis serovar konkukian str. 97-2... gi\|228659324, gi... - gi\|229124022\|ref\|ZP_04253214.1\| Spore germination protein gerM [Bacillus cereus 95/8201], gi\|2286593... gi\|228811564, gi... - gi\|228948206\|ref\|ZP_04110490.1\| Spore germination protein gerM [Bacillus thuringiensis serovar monte... gi\|228935801, gi... - gi\|228935801\|ref\|ZP_04098613.1\| Spore germination protein gerM [Bacillus thuringiensis serovar andal... gi\|228842538, gi... - gi\|228917120\|ref\|ZP_04080678.1\| Spore germination protein gerM [Bacillus thuringiensis serovar pulsi... gi\|254741623 - gi\|254741623\|ref\|ZP_05199310.1\| germination protein gerM [Bacillus anthracis str. Kruger B] gi\|118418872, gi... - gi\|118479647\|ref\|YP_896798.1\| germination protein [Bacillus thuringiensis str. Al Hakam], gi\|1184188... gi\|254724591 - gi\|254724591\|ref\|ZP_05186374.1\| germination protein gerM [Bacillus anthracis str. A1055] gi\|254687029 - gi\|254687029\|ref\|ZP_05150887.1\| germination protein gerM [Bacillus anthracis str. CNEVA-9066] gi\|229186724, gi... - gi\|229186724\|ref\|ZP_04313882.1\| Spore germination protein gerM [Bacillus cereus BGSC 6E1], gi\|228596...	0.0	[1..349]	[1..349]
gi\|42783633, gi\|... - gi\|42783633\|ref\|NP_980880.1\| germination protein gerM [Bacillus cereus ATCC 10987], gi\|42739562\|gb\|A... gi\|228584893, gi... - gi\|229198611\|ref\|ZP_04325313.1\| Spore germination protein gerM [Bacillus cereus m1293], gi\|228584893...	0.0	[1..349]	[1..349]
gi\|228967585, gi... - gi\|228967585\|ref\|ZP_04128609.1\| Spore germination protein gerM [Bacillus thuringiensis serovar sotto... gi\|75760744, gi\|... - gi\|75760744\|ref\|ZP_00740766.1\| Germination protein germ [Bacillus thuringiensis serovar israelensis ... gi\|228910316, gi... - gi\|228910316\|ref\|ZP_04074133.1\| Spore germination protein gerM [Bacillus thuringiensis IBL 200], gi\|... gi\|228903011, gi... - gi\|228903011\|ref\|ZP_04067150.1\| Spore germination protein gerM [Bacillus thuringiensis IBL 4222], gi...	0.0	[1..349]	[1..349]
gi\|30022574, gi\|... - gi\|30022574\|ref\|NP_834205.1\| germination protein germ [Bacillus cereus ATCC 14579], gi\|29898132\|gb\|A... gi\|229152685, gi... - gi\|229152685\|ref\|ZP_04280873.1\| Spore germination protein gerM [Bacillus cereus m1550], gi\|228630831... gi\|229147052, gi... - gi\|229147052\|ref\|ZP_04275412.1\| Spore germination protein gerM [Bacillus cereus BDRD-ST24], gi\|22863... gi\|229129778, gi... - gi\|229129778\|ref\|ZP_04258745.1\| Spore germination protein gerM [Bacillus cereus BDRD-Cer4], gi\|22865...	0.0	[1..349]	[1..349]
gi\|107124174 - gi\|107124174\|gb\|ABF83609.1\| GerM [Bacillus thuringiensis serovar kurstaki]	0.0	[1..349]	[1..349]
gi\|89156765, gi\|... - gi\|89205281\|ref\|ZP_01183852.1\| germination protein gerM [Bacillus weihenstephanensis KBAB4], gi\|8915...	0.0	[1..349]	[1..349]
gi\|89200332, gi\|... - gi\|89200332\|ref\|ZP_01179086.1\| germination protein GerM [Bacillus cereus subsp. cytotoxis NVH 391-98...	5.0E-94	[1..349]	[1..348]
gi\|221324305 - gi\|221324305\|ref\|ZP_03605599.1\| germination (cortex hydrolysis) and sporulation (stage II, multiple ... gi\|221320022 - gi\|221320022\|ref\|ZP_03601316.1\| germination (cortex hydrolysis) and sporulation (stage II, multiple ... gi\|221315104 - gi\|221315104\|ref\|ZP_03596909.1\| germination (cortex hydrolysis) and sporulation (stage II, multiple ... GERM_BACSU - Spore germination protein gerM OS=Bacillus subtilis GN=gerM PE=1 SV=2 GERM_BACSU - Spore germination protein GerM OS=Bacillus subtilis (strain 168) GN=gerM PE=1 SV=2	1.0E-89	[9..349]	[8..366]
gi\|52349219, gi\|... - gi\|52786717\|ref\|YP_092546.1\| GerM [Bacillus licheniformis ATCC 14580], gi\|52349219\|gb\|AAU41853.1\| Ge...	3.0E-82	[1..349]	[2..369]
gi\|25369978 - pir\|\|F84033 germination (cortex hydrolysis) and sporulation (stage II, multiple polar septa) gerM [i... gi\|10175692, gi\|... - gi\|15615632\|ref\|NP_243936.1\| germination (cortex hydrolysis) and sporulation (stage II, multiple pol...	4.0E-80	[8..349]	[11..365]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSTFKWVV GATVSAVLLT GCGFINQEKA TEQIDPPKQV TYTEGGKKEV FKKDKQAQTV  60
   61 NRELYLVDKN GYVVPQTLAI PTPKANEVIQ QTLEYLVKDG PVTNLLPNGF RAVIPANTSM 120
  121 TLDLKKDGTA VIDFSKEMKN YAKEEERQIV ESIAWTLTQF KEVKQVQFQI NGEKLAKMPV 180
  181 GGTPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDGVSRANGI NFDDEQVADV TNTKPVTLYF MAQNNNKQQY YVPVTRRVVE GKENDYAAIV  60
   61 DELVKGPIHQ SLLNDFNPGV KLITNPKLQD GNLTLNFNEN IFINPDKNMI SNYVLKSLVL 120
  121 SLTEKKGVKS VSIEVNGKAN LIDEKGGKLI KPVDRPENVN TGSF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits