YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264363, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264363, gi|....

Description	E-value	Query Range	Subject Range
gi\|228642464, gi... - gi\|229141031\|ref\|ZP_04269574.1\| DNA primase [Bacillus cereus BDRD-ST26], gi\|228642464\|gb\|EEK98752.1\|... gi\|228659653, gi... - gi\|229123832\|ref\|ZP_04253026.1\| DNA primase [Bacillus cereus 95/8201], gi\|228659653\|gb\|EEL15299.1\| D... gi\|229186533, gi... - gi\|229186533\|ref\|ZP_04313695.1\| DNA primase [Bacillus cereus BGSC 6E1], gi\|228596964\|gb\|EEK54622.1\| ... gi\|228625566, gi... - gi\|229157907\|ref\|ZP_04285981.1\| DNA primase [Bacillus cereus ATCC 4342], gi\|228625566\|gb\|EEK82319.1\|... gi\|229198420, gi... - gi\|229198420\|ref\|ZP_04325126.1\| DNA primase [Bacillus cereus m1293], gi\|228585120\|gb\|EEK43232.1\| DNA... gi\|118418690, gi... - gi\|118479465\|ref\|YP_896616.1\| DNA primase [Bacillus thuringiensis str. Al Hakam], gi\|118418690\|gb\|AB... gi\|47567856, gi\|... - gi\|47567856\|ref\|ZP_00238564.1\| DNA primase [Bacillus cereus G9241], gi\|47555533\|gb\|EAL13876.1\| DNA p... gi\|52141208, gi\|... - gi\|52141208\|ref\|YP_085622.1\| DNA primase [Bacillus cereus E33L], gi\|51974677\|gb\|AAU16227.1\| DNA prim... gi\|218535323, gi... - gi\|218905430\|ref\|YP_002453264.1\| DNA primase [Bacillus cereus AH820], gi\|218535323\|gb\|ACK87721.1\| DN... gi\|225787966, gi... - gi\|225866274\|ref\|YP_002751652.1\| DNA primase [Bacillus cereus 03BB102], gi\|225787966\|gb\|ACO28183.1\| ... gi\|221241797, gi... - gi\|222097739\|ref\|YP_002531796.1\| DNA primase [Bacillus cereus Q1], gi\|221241797\|gb\|ACM14507.1\| DNA p... gi\|196039168, gi... - gi\|196039168\|ref\|ZP_03106474.1\| DNA primase [Bacillus cereus NVH0597-99], gi\|196029795\|gb\|EDX68396.1... gi\|228772275, gi... - gi\|228987543\|ref\|ZP_04147662.1\| DNA primase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1], ... gi\|217067852, gi... - gi\|217961784\|ref\|YP_002340354.1\| DNA primase [Bacillus cereus AH187], gi\|217067852\|gb\|ACJ82102.1\| DN... gi\|228916925, gi... - gi\|228916925\|ref\|ZP_04080487.1\| DNA primase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1], g...	0.0	[1..598]	[1..598]
gi\|49332864, gi\|... - gi\|49481308\|ref\|YP_038351.1\| DNA primase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4...	0.0	[1..598]	[1..598]
gi\|30022371, gi\|... - gi\|30022371\|ref\|NP_834002.1\| DNA primase [Bacillus cereus ATCC 14579], gi\|29897929\|gb\|AAP11203.1\| DN... gi\|218235617, gi... - gi\|218235617\|ref\|YP_002369100.1\| DNA primase [Bacillus cereus B4264], gi\|218163574\|gb\|ACK63566.1\| DN... gi\|228631101, gi... - gi\|229152493\|ref\|ZP_04280685.1\| DNA primase [Bacillus cereus m1550], gi\|228631101\|gb\|EEK87738.1\| DNA... gi\|228653887, gi... - gi\|229129570\|ref\|ZP_04258540.1\| DNA primase [Bacillus cereus BDRD-Cer4], gi\|228653887\|gb\|EEL09755.1\|... gi\|228960558, gi... - gi\|228960558\|ref\|ZP_04122207.1\| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001], ...	0.0	[1..598]	[1..598]
gi\|89153662, gi\|... - gi\|89208389\|ref\|ZP_01186898.1\| DNA primase [Bacillus weihenstephanensis KBAB4], gi\|89153662\|gb\|EAR73... gi\|228648348, gi... - gi\|229135119\|ref\|ZP_04263921.1\| DNA primase [Bacillus cereus BDRD-ST196], gi\|228648348\|gb\|EEL04381.1... gi\|228614452, gi... - gi\|229169043\|ref\|ZP_04296759.1\| DNA primase [Bacillus cereus AH621], gi\|228614452\|gb\|EEK71561.1\| DNA...	0.0	[1..598]	[1..600]
gi\|89201809, gi\|... - gi\|89201809\|ref\|ZP_01180544.1\| DNA primase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8915018...	0.0	[1..598]	[1..598]
gi\|42739349, gi\|... - gi\|42783420\|ref\|NP_980667.1\| DNA primase [Bacillus cereus ATCC 10987], gi\|42739349\|gb\|AAS43275.1\| DN...	0.0	[1..565]	[1..565]
gi\|48728623, gi\|... - gi\|77461369\|ref\|YP_350876.1\| DNA primase [Pseudomonas fluorescens Pf0-1], gi\|77385372\|gb\|ABA76885.1\|...	0.0	[1..595]	[1..644]
gi\|213967689, gi... - gi\|213967689\|ref\|ZP_03395836.1\| DNA primase [Pseudomonas syringae pv. tomato T1], gi\|213927465\|gb\|EE... tr\|Q88A59\|Q88A59... - DNA primase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dnaG PE=3 SV=1 gi\|28867766, gi\|... - gi\|28867766\|ref\|NP_790385.1\| DNA primase [Pseudomonas syringae pv. tomato str. DC3000], gi\|28851001\|...	0.0	[1..595]	[1..641]
gi\|71556703, gi\|... - gi\|71736150\|ref\|YP_272919.1\| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556703\|...	0.0	[1..595]	[1..640]
gi\|23471519, gi\|... - gi\|66047867\|ref\|YP_237708.1\| DNA primase [Pseudomonas syringae pv. syringae B728a], gi\|63258574\|gb\|A...	0.0	[1..595]	[1..640]

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Predicted Domain #1

Region A:
Residues: [1-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNRIPEEVV EQIRTSSDIV EVIGEYVQLR KQGRNYFGLC PFHGENSPSF SVSSDKQIFH  60
   61 CFGCGEGGNV FSFLMKMEGL AFTEAVQKLG ERNGIAVAEY TSGQGQQEDI SDDTVIMQQA 120
  121 HELLKKYYHH LLVNTEEGNE ALSYLLKRGI TKEMIEKFEI GYASPAWDAA TKILQKRGLS 180
  181 LSSMEQAGLL IRSEKDGSHY DRFRGRVMFP IYTLQGKVIA FSGRALGDDT PKYLNSPETP 240
  241 IFHKSKLLYN FHQARPFIRK RGQVVLFEGY ADVLAAVKSG VEEAVATMGT ALTEEQAKLL 300
  301 RRNVETVVLC YDGDKAGREA TMKAGQLLLQ VGCQVKVTSL PDKLDPDEYV QQYGTTAFEN 360
  361 LVKSSISFVG FKINYLRLGK NLQDESGKEE YVKSVLKELS LLQDAMQAES YLKSLSQEFS 420
  421 Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.09691
Match:	2au3A
Description:	Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [422-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMETLLNQLH QYRKEQKVQQ KQVKQVSKPS QIVQTKPKLT GFERAEREII YHMLQSPEVA  60
   61 VRMESHIEDF HTEEHKGILY ELYAYYEKGN EPSVGTFLSW LSDEKLKNII TDISTDEFIN 120
  121 PEYTEEVLQS HLETLRRHQE KLEKMEIIFK IKQMEKTDPV EAAKYYVAYL QNQKARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1q57A
Description:	The Crystal Structure of the Bifunctional Primase-Helicase of Bacteriophage T7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits