YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258835, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258835, gi|....

Description	E-value	Query Range	Subject Range
gi\|255314462 - gi\|255314462\|ref\|ZP_05356045.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|255517139 - gi\|255517139\|ref\|ZP_05384815.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|255650244 - gi\|255650244\|ref\|ZP_05397146.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|254975333 - gi\|254975333\|ref\|ZP_05271805.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|255092724 - gi\|255092724\|ref\|ZP_05322202.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|145954563, gi... - gi\|90574741\|ref\|ZP_01231233.1\| hypothetical protein CdifQ_02001808 [Clostridium difficile QCD-32g58]...	9.0E-56	[1..152]	[1..152]
gi\|126699303, gi... - gi\|126699303\|ref\|YP_001088200.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synt... gi\|255100828 - gi\|255100828\|ref\|ZP_05329805.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth... gi\|255306717 - gi\|255306717\|ref\|ZP_05350888.1\| riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synth...	1.0E-55	[1..152]	[1..152]
RISB_CALS8 - 6,7-dimethyl-8-ribityllumazine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 /...	1.0E-52	[3..153]	[4..154]
RISB_BACWK - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ribH PE=3 S... RISB_BACHK - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN... RISB_BACCZ - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain ZK / E33L) GN=ribH PE=3 SV=1 RISB_BACHK - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus thuringiensis subsp. konkukian GN=ribH PE=3 SV=1 gi\|228916753, gi... - gi\|228916753\|ref\|ZP_04080318.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus thuringiensis sero... RISB_BACC3 - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain 03BB102) GN=ribH PE=3 SV=1 gi\|228747918, gi... - gi\|229013325\|ref\|ZP_04170465.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus mycoides DSM 2048]... gi\|228935435, gi... - gi\|228935435\|ref\|ZP_04098253.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus thuringiensis sero... gi\|228690149, gi... - gi\|229093175\|ref\|ZP_04224293.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus Rock3-42], ... gi\|228717533, gi... - gi\|229061787\|ref\|ZP_04199120.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus AH603], gi\|... gi\|196047220, gi... - gi\|196047220\|ref\|ZP_03114436.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus 03BB108], g... gi\|228614589, gi... - gi\|229168859\|ref\|ZP_04296577.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus AH621], gi\|... gi\|228648598, gi... - gi\|229134923\|ref\|ZP_04263730.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus BDRD-ST196]... gi\|196038611, gi... - gi\|196038611\|ref\|ZP_03105919.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus NVH0597-99]... gi\|229186359, gi... - gi\|229186359\|ref\|ZP_04313524.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus BGSC 6E1], ... RISB_BACAH - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=ribH PE=3 SV=...	1.0E-51	[1..153]	[1..153]
gi\|89200757, gi\|... - gi\|89200757\|ref\|ZP_01179507.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus subsp. cytot...	2.0E-51	[1..153]	[2..154]
gi\|228608698, gi... - gi\|229174790\|ref\|ZP_04302313.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus MM3], gi\|22... gi\|47568173, gi\|... - gi\|47568173\|ref\|ZP_00238877.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus G9241], gi\|4... gi\|229146689, gi... - gi\|229146689\|ref\|ZP_04275056.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus BDRD-ST24],... gi\|228987307, gi... - gi\|228987307\|ref\|ZP_04147428.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus thuringiensis sero... gi\|228620458, gi... - gi\|229163052\|ref\|ZP_04291008.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus R309803], g... gi\|228625655, gi... - gi\|229157698\|ref\|ZP_04285773.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus ATCC 4342],...	3.0E-51	[1..153]	[1..153]
RISB_CLOB8 - 6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)...	3.0E-51	[2..153]	[3..154]
gi\|206976340, gi... - gi\|206976340\|ref\|ZP_03237248.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus H3081.97], ... RISB_BACC1 - 6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=ribH PE=... gi\|228585256, gi... - gi\|229198237\|ref\|ZP_04324945.1\| 6,7-dimethyl-8-ribityllumazine synthase [Bacillus cereus m1293], gi\|...	3.0E-51	[1..153]	[1..153]
gi\|89097871, gi\|... - gi\|89097871\|ref\|ZP_01170758.1\| riboflavin synthase subunit beta [Bacillus sp. NRRL B-14911], gi\|8908...	4.0E-51	[2..153]	[9..160]
RISB_CLOAB - 6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / J... RISB_CLOAB - 6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium acetobutylicum GN=ribH PE=3 SV=1	8.0E-51	[2..153]	[3..154]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFEGHLVGT GLKVGVVVGR FNEFITSKLL GGALDGLKRH GVEENDIDVA WVPGAFEIPL  60
   61 IAKKMANSGK YDAVITLGTV IRGATTHYDY VCNEVAKGVA SLSLQTDIPV IFGVLTTETI 120
  121 EQAIERAGTK AGNKGYESAV AAIEMAHLSK HWA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.045757
Match:	1rvvA
Description:	Lumazine synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
6,7-dimethyl-8-ribityllumazine synthase activity	5.75018589898096	bayes_pls_golite062009
intramolecular transferase activity, transferring acyl groups	4.16647819232963	bayes_pls_golite062009
catalytic activity	2.15114163253066	bayes_pls_golite062009
riboflavin synthase activity	1.87185315979746	bayes_pls_golite062009
isomerase activity	0.746884414964445	bayes_pls_golite062009
intramolecular transferase activity	0.73510037351038	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: