YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49186991, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49186991, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	9.0E-63	[2..426]	[136..565]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	2.0E-58	[5..427]	[24..451]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	1.0E-57	[3..427]	[27..456]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	1.0E-56	[3..427]	[22..451]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	6.0E-56	[3..426]	[18..448]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	8.0E-56	[3..426]	[18..448]
gi\|53830059 - gi\|53830059\|gb\|AAU94938.1\| anchor protein [Homo sapiens]	2.0E-55	[4..411]	[3474..3921]
gi\|17432153 - gi\|17432153\|emb\|CAD18829.1\| probable permease transmembrane protein [Ralstonia solanacearum GMI1000] gi\|17549897 - gi\|17549897\|ref\|NP_523237.1\| hypothetical protein RS02237 [Ralstonia solanacearum GMI1000]	4.0E-54	[2..429]	[1..433]
gi\|84386832, gi\|... - gi\|84386832\|ref\|ZP_00989857.1\| putative transporter [Vibrio splendidus 12B01], gi\|84378360\|gb\|EAP952...	1.0E-53	[5..426]	[28..456]
gi\|19743668 - gi\|19743668\|gb\|AAL92573.1\| putative xanthine/uracil permease [Delftia acidovorans]	1.0E-53	[2..426]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGILERTFK LGLHETSPKQ EVLAGVTSFF TIVYIMIVNA SILSDAGIPL EAGILATVFS  60
   61 SFVGCLLMAF WANAPAILVP GMGVNAFFTY TAVHTLGLTW QEALAAVFIS GIIFAIAAFT 120
  121 PIARVLSVSI PKSLKEAITV GIGLFLAFIG LQKGGLVVSN PNTAVAMGKL SNPVVL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [177-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATVLTLIVAL VLFIRNVRGN FLWTIAIGTG IAWLFGLVDT SQVGNSSFSF ANYGDVFGAM  60
   61 SFGKLSSLPF WIATFSLSMV LIFENMGLLH GLLEDDRKFP RAYQANAISA MTCGLFGTSP 120
  121 TVSTVESAAG ITAGGKTGLT SIVTGLLFFA SLFALPFVKL IPDSAIAPIL IIIGGLMITS 180
  181 IQQIPLNDFS EGFPAFLIII MIPLTYSIAD GIAFGFIAYP ILKVALGKRK EVAPSMYIIT 240
  241 CLFLAMFVLH AIG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits