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View Structure Prediction Details

Protein: gi|30263828, gi|...
Organism: Bacillus anthracis str. Ames
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263828, gi|....

Description E-value Query
Range
Subject
Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1
RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...
2.0E-68 [1..184] [1..184]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1
2.0E-67 [1..185] [1..185]
RRF_DESHD - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=...
3.0E-67 [1..185] [1..185]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1
RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1
RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...
3.0E-67 [1..185] [1..185]
RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1
RRF_VIBCM - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1
gi|229507669, gi... - gi|229507669|ref|ZP_04397174.1| ribosome recycling factor [Vibrio cholerae BX 330286], gi|229355174|...
gi|254286071, gi... - gi|254286071|ref|ZP_04961032.1| ribosome recycling factor [Vibrio cholerae AM-19226], gi|197752556|r...
gi|229512136, gi... - gi|229512136|ref|ZP_04401615.1| ribosome recycling factor [Vibrio cholerae B33], gi|229352101|gb|EEO...
gi|153827697, gi... - gi|153827697|ref|ZP_01980364.1| ribosome recycling factor [Vibrio cholerae MZO-2], gi|149737829|gb|E...
gi|229343960, gi... - gi|229519271|ref|ZP_04408714.1| ribosome recycling factor [Vibrio cholerae RC9], gi|229343960|gb|EEO...
gi|229522203, gi... - gi|229522203|ref|ZP_04411620.1| ribosome recycling factor [Vibrio cholerae TM 11079-80], gi|22934112...
gi|229337841, gi... - gi|229524260|ref|ZP_04413665.1| ribosome recycling factor [Vibrio cholerae bv. albensis VL426], gi|2...
gi|229528740, gi... - gi|229528740|ref|ZP_04418130.1| ribosome recycling factor [Vibrio cholerae 12129(1)], gi|229332514|g...
gi|229607173, gi... - gi|229607173|ref|YP_002877821.1| ribosome recycling factor [Vibrio cholerae MJ-1236], gi|229369828|g...
gi|254845092, gi... - gi|254849387|ref|ZP_05238737.1| ribosome recycling factor [Vibrio cholerae MO10], gi|254845092|gb|EE...
RRF_VIBC3 - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ...
RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G...
gi|153221229, gi... - gi|153221229|ref|ZP_01952244.1| ribosome recycling factor [Vibrio cholerae MAK 757], gi|124119758|gb...
gi|153803002, gi... - gi|153803002|ref|ZP_01957588.1| ribosome recycling factor [Vibrio cholerae MZO-3], gi|124121445|gb|E...
4.0E-67 [1..185] [1..185]
RRF_SALG2 - Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1
gi|204927412, gi... - gi|204927412|ref|ZP_03218614.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
gi|200388182, gi... - gi|200388182|ref|ZP_03214794.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALDC - Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1
gi|213425945 - gi|213425945|ref|ZP_03358695.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1
gi|213416682 - gi|213416682|ref|ZP_03349826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
gi|213163136 - gi|213163136|ref|ZP_03348846.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALEP - Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1
gi|16759209 - gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ...
RRF_SALHS - Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1
RRF_SALNS - Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frr PE=...
gi|168823247, gi... - gi|205340485|gb|EDZ27249.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar W...
gi|29136383, gi|... - gi|29140759|ref|NP_804101.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ...
gi|195632657, gi... - gi|195632657|gb|EDX51111.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar N...
gi|197240067, gi... - gi|197261812|ref|ZP_03161886.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALA4 - Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1
RRF_SALSV - Ribosome-recycling factor OS=Salmonella schwarzengrund (strain CVM19633) GN=frr PE=3 SV=1
gi|194457134, gi... - gi|194470770|ref|ZP_03076754.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1
RRF_SALPC - Ribosome-recycling factor OS=Salmonella paratyphi C (strain RKS4594) GN=frr PE=3 SV=1
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1
RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1
gi|214000838 - gi|214000838|ref|ZP_03411573.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1
gi|213646665 - gi|213646665|ref|ZP_03376718.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
gi|213580802 - gi|213580802|ref|ZP_03362628.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
lcl|NC_016856.1_... - [gene=frr] [protein=ribosome recycling factor] [protein_id=YP_005235890.1] [location=257853..258410]
RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1
RRF_SALAR - Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr ...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1
gi|205331572, gi... - gi|205331572|gb|EDZ18336.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4...
gi|205322189, gi... - gi|205322189|gb|EDZ10028.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S...
gi|168263914, gi... - gi|205347503|gb|EDZ34134.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H...
gi|205336212, gi... - gi|205336212|gb|EDZ22976.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H...
gi|168234997, gi... - gi|197291879|gb|EDY31229.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S...
gi|168230526, gi... - gi|205335095|gb|EDZ21859.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar K...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis (strain SC-B67) GN=frr PE=3 SV=1
gi|238911285 - gi|238911285|ref|ZP_04655122.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1
5.0E-67 [1..184] [1..184]
gi|24050375, gi|... - gi|24111607|ref|NP_706117.1| ribosome recycling factor [Shigella flexneri 2a str. 301], gi|24050375|...
gi|195938146 - gi|195938146|ref|ZP_03083528.1| ribosome recycling factor [Escherichia coli O157:H7 str. EC4024]
RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frr PE=3...
gi|208809164, gi... - gi|208809164|ref|ZP_03251501.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206], gi...
gi|30061729, gi|... - gi|30061729|ref|NP_835900.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T], gi|3003997...
gi|208812775, gi... - gi|208812775|ref|ZP_03254104.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045], gi...
RRF_ECO57 - Ribosome-recycling factor OS=Escherichia coli O157:H7 GN=frr PE=3 SV=1
gi|208739249, gi... - gi|208819126|ref|ZP_03259446.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042], gi...
EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t...
RRF_ECO5E - Ribosome-recycling factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frr PE=3 SV=1
gi|15799854, gi|... - gi|15799854|ref|NP_285866.1| ribosome recycling factor [Escherichia coli O157:H7 EDL933], gi|1251289...
RRF_ECOSE - Ribosome-recycling factor OS=Escherichia coli (strain SE11) GN=frr PE=3 SV=1
RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1
gi|217321359, gi... - gi|217325138|ref|ZP_03441222.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588], g...
gi|189357057, gi... - gi|189357057|gb|EDU75476.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401], gi|168...
gi|189365640, gi... - gi|189365640|gb|EDU84056.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501], gi|168...
gi|189360728, gi... - gi|189360728|gb|EDU79147.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486], gi|168...
gi|168777009, gi... - gi|187767671|gb|EDU31515.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196], gi|168...
gi|189000476, gi... - gi|189000476|gb|EDU69462.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076], gi|168...
gi|168789281, gi... - gi|189371119|gb|EDU89535.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869], gi|1687...
RRF_ECODH - Ribosome-recycling factor OS=Escherichia coli (strain K12 / DH10B) GN=frr PE=3 SV=1
RRF_ECOSM - Ribosome-recycling factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frr PE=3 SV=1
RRF_ESCF3 - Ribosome-recycling factor OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN...
RRF_ECO8A - Ribosome-recycling factor OS=Escherichia coli O8 (strain IAI1) GN=frr PE=3 SV=1
RRF_ECO45 - Ribosome-recycling factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frr PE=3 SV=1
RRF_ECO81 - Ribosome-recycling factor OS=Escherichia coli O81 (strain ED1a) GN=frr PE=3 SV=1
RRF_ECO55 - Ribosome-recycling factor OS=Escherichia coli (strain 55989 / EAEC) GN=frr PE=3 SV=1
RRF_ECO7I - Ribosome-recycling factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frr PE=3 SV=1
RRF_ECOLC - Ribosome-recycling factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frr PE=3 SV=...
RRF_ECOLU - Ribosome-recycling factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=frr PE=3 SV=1
RRF_SHIFL - Ribosome-recycling factor OS=Shigella flexneri GN=frr PE=3 SV=1
EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t...
RRF_ECOLI - Ribosome recycling factor (Ribosome-releasing factor) (RRF) - Escherichia coli
gi|75258839, gi|... - gi|75258839|ref|ZP_00730229.1| COG0233: Ribosome recycling factor [Escherichia coli E22], gi|1930632...
gi|190906953, gi... - gi|75240239|ref|ZP_00724186.1| COG0233: Ribosome recycling factor [Escherichia coli F11], gi|1911728...
gi|75238875, gi|... - gi|75238875|ref|ZP_00722857.1| COG0233: Ribosome recycling factor [Escherichia coli E110019], gi|193...
gi|75230467, gi|... - gi|75230467|ref|ZP_00716948.1| COG0233: Ribosome recycling factor [Escherichia coli B7A], gi|1911663...
RRF_SHIBS - Ribosome-recycling factor OS=Shigella boydii serotype 4 (strain Sb227) GN=frr PE=3 SV=1
RRF_SHIDS - Ribosome-recycling factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frr PE=3 SV=1
sp|B7UIL7|RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1
RRF_SHISS - Ribosome-recycling factor OS=Shigella sonnei (strain Ss046) GN=frr PE=3 SV=1
gi|75512184, gi|... - gi|75512184|ref|ZP_00734756.1| COG0233: Ribosome recycling factor [Escherichia coli 53638], gi|18849...
gi|83585488, gi|... - gi|83585488|ref|ZP_00924133.1| COG0233: Ribosome recycling factor [Escherichia coli 101-1], gi|19443...
gi|194433418, gi... - gi|83569754|ref|ZP_00921204.1| COG0233: Ribosome recycling factor [Shigella dysenteriae 1012], gi|19...
gi|194428316, gi... - gi|75210495|ref|ZP_00710646.1| COG0233: Ribosome recycling factor [Escherichia coli B171], gi|194428...
RRF_ECOHS - Ribosome-recycling factor OS=Escherichia coli O9:H4 (strain HS) GN=frr PE=3 SV=1
RRF_ECO24 - Ribosome-recycling factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frr PE=3 SV=1
RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6 GN=frr PE=3 SV=1
RRF_SHIB3 - Ribosome-recycling factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frr PE=3 SV...
gi|188014582, gi... - gi|188014582|gb|EDU52704.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113], gi|168...
gi|254590705, gi... - gi|254791305|ref|YP_003076142.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359], ...
gi|254160291, gi... - gi|254160291|ref|YP_003043399.1| ribosome releasing factor [Escherichia coli B str. REL606], gi|2539...
gi|226840697, gi... - gi|254037591|ref|ZP_04871668.1| ribosome-recycling factor [Escherichia sp. 1_1_43], gi|226840697|gb|...
gi|253774801, gi... - gi|254287094|ref|YP_003052842.1| ribosome releasing factor [Escherichia coli BL21(DE3)], gi|25397640...
gi|242376003, gi... - gi|251783730|ref|YP_002998034.1| hypothetical protein B21_00169 [Escherichia coli BL21], gi|24237600...
RRF_ECOBW - Ribosome-recycling factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=frr PE=3 SV=1
gi|226902243, gi... - gi|237704331|ref|ZP_04534812.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA], gi|226902243|...
gi|227884915, gi... - gi|227884915|ref|ZP_04002720.1| ribosome recycling factor [Escherichia coli 83972], gi|227838053|gb|...
gi|21239027, gi|... - gi|89107052|ref|AP_000832.1| ribosome recycling factor [Escherichia coli str. K-12 substr. W3110], g...
gi|124529604, gi... - gi|124529604|ref|ZP_01700548.1| ribosome recycling factor [Escherichia coli B], gi|124499760|gb|EAY4...
RRF_ECOUT - Ribosome-recycling factor OS=Escherichia coli (strain UTI89 / UPEC) GN=frr PE=3 SV=1
gi|13359630, gi|... - gi|15829428|ref|NP_308201.1| ribosome recycling factor [Escherichia coli O157:H7 str. Sakai], gi|133...
RRF_ECOL5 - Ribosome-recycling factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frr PE=3 SV=1
RRF_SHIF8 - Ribosome-recycling factor OS=Shigella flexneri serotype 5b (strain 8401) GN=frr PE=3 SV=1
7.0E-67 [1..184] [1..184]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...
7.0E-67 [1..184] [1..184]
RRF_BACHD - Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3
RRF_BACHD - Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ...
8.0E-67 [1..185] [1..185]
RRF_DESHY - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1
9.0E-67 [1..185] [1..185]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQQVLKFSN EKMEKAVAAY SRELATVRAG RASASVLDKV QVDYYGAPTP VVQLANITVP  60
   61 EARLLVIQPY DKTSIGDIEK AILKADLGLN PSNDGTVIRI AFPALTEERR RDLVKVVKKY 120
  121 AEEAKVAVRN VRRDGNDDLK KLEKAGEITE DDLRGYTEDI QKETDKYIAK VDEIAKNKEK 180
  181 EIMEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 1ek8A
Description: Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation regulator activity 4.3587179630028 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.16037247039451 bayes_pls_golite062009
nucleic acid binding 3.79085926340206 bayes_pls_golite062009
binding 2.89152455528061 bayes_pls_golite062009
translation termination factor activity 2.10810503428749 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle