YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258443, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258443, gi|....

Description	E-value	Query Range	Subject Range
gi\|90336336, gi\|... - gi\|90419399\|ref\|ZP_01227309.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas sp... gi\|90336336, gi\|... - gi\|90419399\|ref\|ZP_01227309.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas sp...	2.0E-50	[20..230]	[10..206]
CLPP2_RHIME, CLP... - ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium meliloti GN=clpP2 PE=3 SV=1, (P58278) ... CLPP2_RHIME - ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium meliloti (strain 1021) GN=clpP2 PE=3 S...	2.0E-50	[21..229]	[11..205]
CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2 CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum (strain SS9) GN=clpP PE=3...	2.0E-50	[21..226]	[8..199]
gi\|88817642, gi\|... - gi\|88860444\|ref\|ZP_01135082.1\| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas tun...	2.0E-50	[19..227]	[10..204]
CLPP1_CHESB - ATP-dependent Clp protease proteolytic subunit 1 OS=Chelativorans sp. (strain BNC1) GN=clpP1 PE=3 SV...	3.0E-50	[20..230]	[10..206]
CLPP_THIDA - ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=...	3.0E-50	[7..225]	[3..207]
CLPP_PSEPF - ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf0-1) GN=clpP PE=...	3.0E-50	[4..227]	[3..211]
gi\|150396095, gi... - gi\|150396095\|ref\|YP_001326562.1\| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium medic...	3.0E-50	[21..229]	[11..205]
gi\|46914236, gi\|... - gi\|54309798\|ref\|YP_130818.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundu... gi\|27363512 - ref\|NP_759040.1\| ATP-dependent Clp protease, proteolytic subunit [Photobacterium profundum SS9]	4.0E-50	[9..226]	[4..207]
gi\|62179060, gi\|... - gi\|62179060\|ref\|YP_215477.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub...	6.0E-50	[21..225]	[55..245]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTERDRYTNE EKEAEPKETG KEASIVEKIQ QLGQTNVPQM NESRIHCLTI VGQVEGHVQL  60
   61 PPQNKTTKYE HIIPQIVAIE QNPKIEGLLI VLNTVGGDVE AGLAISEMVA SLSKPTVSLV 120
  121 LGGGHSIGVP IAVSTDYSFI AETATMTIHP IRLTGLVIGV PQTFEYLDKM QERVIRFVTK 180
  181 HSKVTEDRFK ELMFAKGNLT RDIGTNVIGG DAVKYGLIDD VGGIGNAIRK LNELIDNRAD 240
  241 DHAEGTMLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.154902
Match:	1tyfA
Description:	Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.56104302664892	bayes_pls_golite062009
CoA carboxylase activity	0.17943989014017	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.10021481774306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: