YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263558, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263558, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478968, gi\|... - gi\|49478968\|ref\|YP_037688.1\| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konk...	2.0E-76	[1..315]	[1..315]
gi\|42782681, gi\|... - gi\|42782681\|ref\|NP_979928.1\| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987], gi\|427...	3.0E-76	[1..315]	[1..315]
gi\|52141929, gi\|... - gi\|52141929\|ref\|YP_084901.1\| DNA polymerase III subunit epsilon [Bacillus cereus E33L], gi\|51975398\|...	1.0E-75	[1..315]	[1..315]
gi\|30021712, gi\|... - gi\|30021712\|ref\|NP_833343.1\| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579], gi\|298...	2.0E-74	[1..315]	[1..315]
gi\|75760700, gi\|... - gi\|75760700\|ref\|ZP_00740725.1\| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar isra... gi\|228902109, gi... - gi\|228902109\|ref\|ZP_04066273.1\| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222], ...	3.0E-74	[2..315]	[5..318]
gi\|47555372, gi\|... - gi\|47567894\|ref\|ZP_00238601.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereu...	1.0E-70	[2..297]	[5..300]
DPO3_BACHD - DNA polymerase III polC-type OS=Bacillus halodurans GN=polC PE=3 SV=1 DPO3_BACHD - DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / J...	4.0E-67	[6..315]	[415..713]
gi\|89153641, gi\|... - gi\|89208415\|ref\|ZP_01186923.1\| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB...	5.0E-66	[1..314]	[1..314]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	2.0E-65	[8..315]	[419..717]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	2.0E-65	[7..315]	[415..713]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNISLPLDY VVIDFETTGF NPYNDKIIQV AAVKYRNHEL VDQFVSYVNP KRPIPDRIMS  60
   61 LTGITNYRVS DAPTIEEVLP LFLAFLHT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2p1jA
Description:	No description for 2p1jA was found.

Predicted Domain #2

Region A:
Residues: [89-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVIVAHNASF DMRFLKSNVN MLGLPEPKNK VIDTVFLAKK YMKHAPNHKL ETLKRMLGIR  60
   61 LSSHNAFDDC ITCAAVYQKC ASIEEEAKRK SNTEVLDETA VYEAVKEILV RNKRDIEWIR 120
  121 CMNVGSYLDI KAFYPVMRLK VKGRKKYVLT DILEDDVKEI CTSLACEPAL KSEVGNTRIM 180
  181 LNCLEDVLKL ESYILEQYDF VLQALHDYKQ SEMNADEKLK EYLNIMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1d8yA
Description:	Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits