YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258159, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258159, gi|....

Description	E-value	Query Range	Subject Range
GERKA_BACSU - Spore germination protein KA OS=Bacillus subtilis (strain 168) GN=gerKA PE=3 SV=2 GRKA_BACSU, GERK... - (P49939) Spore germination protein KA, Spore germination protein KA OS=Bacillus subtilis GN=gerKA PE... gi\|221312506 - gi\|221312506\|ref\|ZP_03594311.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221317443 - gi\|221317443\|ref\|ZP_03598737.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221321705 - gi\|221321705\|ref\|ZP_03602999.1\| germination response to the combination of glucose, fructose, L-aspa...	674.0	[0..1]	[509..1]
gi\|83573786, gi\|... - gi\|83590872\|ref\|YP_430881.1\| GerA spore germination protein [Moorella thermoacetica ATCC 39073], gi\|...	672.0	[0..5]	[502..29]
gi\|1063254, gi\|2... - pir\|\|I39858 germination response gerKA protein - Bacillus subtilis, gi\|1063254\|dbj\|BAA11254.1\| GerK...	665.0	[0..5]	[509..15]
gi\|2204284 - gi\|2204284\|gb\|AAB61393.1\| germination protein	665.0	[0..1]	[509..1]
gi\|49331778, gi\|... - gi\|49480222\|ref\|YP_034893.1\| spore germination protein KA [Bacillus thuringiensis serovar konkukian ... gi\|218538261, gi... - gi\|218901830\|ref\|YP_002449664.1\| spore germination protein GerKA [Bacillus cereus AH820], gi\|2185382... gi\|195991689, gi... - gi\|196035722\|ref\|ZP_03103125.1\| spore germination protein GerKA [Bacillus cereus W], gi\|195991689\|gb... gi\|228815289, gi... - gi\|228944387\|ref\|ZP_04106760.1\| Spore germination protein KA [Bacillus thuringiensis serovar monterr...	647.0	[0..16]	[510..4]
gi\|56420159, gi\|... - gi\|56420159\|ref\|YP_147477.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5638000...	646.0	[0..19]	[509..26]
gi\|254754978 - gi\|254754978\|ref\|ZP_05207012.1\| spore germination protein GerKA [Bacillus anthracis str. Vollum] gi\|254738752 - gi\|254738752\|ref\|ZP_05196455.1\| spore germination protein GerKA [Bacillus anthracis str. Western Nor... gi\|177652865, gi... - gi\|177652865\|ref\|ZP_02935238.1\| spore germination protein GerKA [Bacillus anthracis str. A0174], gi\|... gi\|254722091 - gi\|254722091\|ref\|ZP_05183880.1\| spore germination protein GerKA [Bacillus anthracis str. A1055] gi\|190568509, gi... - gi\|190568509\|ref\|ZP_03021415.1\| spore germination protein GerKA [Bacillus anthracis Tsiankovskii-I],... gi\|254684288 - gi\|254684288\|ref\|ZP_05148148.1\| spore germination protein GerKA [Bacillus anthracis str. CNEVA-9066] gi\|170666987, gi... - gi\|170689002\|ref\|ZP_02880202.1\| spore germination protein GerKA [Bacillus anthracis str. A0465], gi\|... gi\|170708457, gi... - gi\|170708457\|ref\|ZP_02898899.1\| spore germination protein GerKA [Bacillus anthracis str. A0389], gi\|... gi\|167529416, gi... - gi\|167635157\|ref\|ZP_02393473.1\| spore germination protein GerKA [Bacillus anthracis str. A0442], gi\|... gi\|167511140, gi... - gi\|167640920\|ref\|ZP_02399178.1\| spore germination protein GerKA [Bacillus anthracis str. A0193], gi\|... gi\|254762291 - gi\|254762291\|ref\|ZP_05214135.1\| spore germination protein GerKA [Bacillus anthracis str. Australia 9... gi\|165872946, gi... - gi\|165872946\|ref\|ZP_02217569.1\| spore germination protein GerKA [Bacillus anthracis str. A0488], gi\|... gi\|49177554, gi\|... - gi\|49183627\|ref\|YP_026879.1\| spore germination protein GerKA [Bacillus anthracis str. Sterne], gi\|49... gi\|47525914, gi\|... - gi\|47525914\|ref\|YP_017263.1\| spore germination protein GerKA [Bacillus anthracis str. 'Ames Ancestor... gi\|30260789, gi\|... - gi\|30260789\|ref\|NP_843166.1\| spore germination protein GerKA [Bacillus anthracis str. Ames], gi\|3025... gi\|21398593 - ref\|NP_654578.1\| hypothetical protein BA_1218 [Bacillus anthracis str. A2012] gi\|229604871, gi... - gi\|229604871\|ref\|YP_002865233.1\| spore germination protein GerKA [Bacillus anthracis str. A0248], gi... gi\|227816495, gi... - gi\|227816495\|ref\|YP_002816504.1\| spore germination protein GerKA [Bacillus anthracis str. CDC 684], ...	645.0	[0..16]	[510..4]
gi\|51978145, gi\|... - gi\|52144676\|ref\|YP_082152.1\| spore germination protein KA [Bacillus cereus E33L], gi\|51978145\|gb\|AAU...	645.0	[0..16]	[510..4]
gi\|65318060 - gi\|65318060\|ref\|ZP_00391019.1\| COG0477: Permeases of the major facilitator superfamily [Bacillus ant... gi\|228827645, gi... - gi\|228932062\|ref\|ZP_04094954.1\| Spore germination protein KA [Bacillus thuringiensis serovar andalou...	644.0	[0..16]	[510..7]
gi\|30018820, gi\|... - gi\|30018820\|ref\|NP_830451.1\| spore germination protein KA [Bacillus cereus ATCC 14579], gi\|29894362\|...	640.0	[0..16]	[510..4]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFNKWIRG EKSFSGQEQA DHILNKSISS SLSLNLKHLS KLFSGIPELI TRTFPLKNGK  60
   61 EAALIYMEGL VDKTVINVDI LRPLLFKEWN EDDFWESSIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGNIKEVQKW TDIEQSLLHG KSILFINGQL SALELDTQAA PKRSIEEPTT ESSLKSSHEG  60
   61 FNEVASDSIA LIRRYIPNRE LKVKAFTVGE RAASKVFMLY LADVA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [206-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEDVIQEMSC RIESIKVDAI LTTGELEGFV EDNSYTLFPQ LSITERPDTT AHHILDGRIA  60
   61 VVVDRSPGVL IGPMTFSSFF QTIDDYSFRP MIPSFIRLLR FTGLFIAIFA PALYIAMISF 120
  121 HYEVIPLKLL LTIGESRAKI PFPPILEALL MELVLEMLRE AAVRLPGPVG QTIGVVGGIV 180
  181 IGQAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [391-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQAGIVSNVM VIVVSITAVA SFIIPNLEMS AGIRLLRFPM MIIASLFGVI GIMVGMAIII  60
   61 IHILSMESLG VPYGSPFSPL FASDLKDILV RLPWKIMKKR PLSLNLKQEN RQSDIEEMEE 120
  121 DK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits