YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258079, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258079, gi|....

Description	E-value	Query Range	Subject Range
gi\|49330541, gi\|... - gi\|49478985\|ref\|YP_037579.1\| phosphoglycerate mutase [Bacillus thuringiensis serovar konkukian str. ...	7.0E-50	[1..234]	[1..234]
gi\|51975509, gi\|... - gi\|52142040\|ref\|YP_084789.1\| phosphoglycerate mutase [Bacillus cereus E33L], gi\|51975509\|gb\|AAU17059...	1.0E-49	[1..234]	[1..234]
gi\|163863311, gi... - gi\|89206609\|ref\|ZP_01185165.1\| Phosphoglycerate/bisphosphoglycerate mutase [Bacillus weihenstephanen... gi\|228649147, gi... - gi\|229134304\|ref\|ZP_04263118.1\| Phosphoglycerate mutase [Bacillus cereus BDRD-ST196], gi\|228649147\|g...	4.0E-49	[1..234]	[2..237]
gi\|50603688, gi\|... - gi\|50603688\|gb\|AAH77484.1\| MGC82549 protein [Xenopus laevis], gi\|148233078\|ref\|NP_001086809.1\| MGC82...	7.0E-48	[12..232]	[5..246]
gi\|42782548, gi\|... - gi\|42782548\|ref\|NP_979795.1\| phosphoglycerate mutase, putative [Bacillus cereus ATCC 10987], gi\|4273...	2.0E-47	[1..234]	[1..236]
gi\|47223880 - gi\|47223880\|emb\|CAG06057.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-47	[12..232]	[5..246]
PGAM1_CHICK - Phosphoglycerate mutase 1 OS=Gallus gallus GN=PGAM1 PE=1 SV=3	5.0E-47	[12..232]	[5..246]
GPMA_CHLPM - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlorobium phaeovibrioides (strain DSM ...	7.0E-47	[10..232]	[1..241]
gi\|228901955, gi... - gi\|228901955\|ref\|ZP_04066121.1\| Phosphoglycerate mutase [Bacillus thuringiensis IBL 4222], gi\|228857... gi\|228966363, gi... - gi\|228966363\|ref\|ZP_04127417.1\| Phosphoglycerate mutase [Bacillus thuringiensis serovar sotto str. T... gi\|74490879, gi\|... - gi\|75761637\|ref\|ZP_00741587.1\| Phosphoglycerate mutase family protein [Bacillus thuringiensis serova...	1.0E-46	[1..234]	[1..236]

Back

Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRETDSNV VTLYVTRHGK TILNTNHRAQ GWADSPLVEK GVEVATNLGT GLKDIHFMNA  60
   61 YSSDSGRAIE TANLVLKYSE QSKLKLEQRK KLRELNFGIF EGEKLDNMWD AVGKAAGVTS 120
  121 PEELLKFSIQ EVIDLIRAAD PTKQAEDWEL FSTRIKAEID KISEEAAKDG GGNVLVVVHG 180
  181 LLITTLIEML DSSKTKLGVE NASVTKIVYQ DGIYTVESVG DMSYVAKGKE SVEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.09691
Match:	1h2eA
Description:	Broad specificity phosphatase PhoE (YhfR)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoglycerate mutase activity	2.44130212442914	bayes_pls_golite062009
catalytic activity	1.74758487942433	bayes_pls_golite062009
phosphofructokinase activity	1.32754415318102	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	1.3155280505393	bayes_pls_golite062009
6-phosphofructo-2-kinase activity	0.940317463927411	bayes_pls_golite062009
hydrolase activity	0.849651362333977	bayes_pls_golite062009
isomerase activity	0.78897146524644	bayes_pls_golite062009
fructose-2,6-bisphosphate 2-phosphatase activity	0.65789048948205	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.60968648160451	bayes_pls_golite062009
carbohydrate kinase activity	0.31535814970436	bayes_pls_golite062009
intramolecular transferase activity	0.31181714941139	bayes_pls_golite062009
carbohydrate phosphatase activity	0.11293479631677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: