YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262707, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262707, gi|....

Description	E-value	Query Range	Subject Range
gi\|71845602, gi\|... - gi\|71905981\|ref\|YP_283568.1\| preprotein translocase subunit SecY [Dechloromonas aromatica RCB], gi\|7...	0.0	[4..434]	[7..432]
gi\|51976240, gi\|... - gi\|52142771\|ref\|YP_084058.1\| preprotein translocase subunit SecY [Bacillus cereus E33L], gi\|51976240...	0.0	[1..434]	[1..434]
gi\|49479163, gi\|... - gi\|49479163\|ref\|YP_036829.1\| preprotein translocase subunit SecY [Bacillus thuringiensis serovar kon...	0.0	[1..434]	[1..434]
gi\|114327238, gi... - gi\|114327238\|ref\|YP_744395.1\| preprotein translocase subunit SecY [Granulibacter bethesdensis CGDNIH...	0.0	[5..433]	[14..440]
gi\|47552735, gi\|... - gi\|47570599\|ref\|ZP_00241216.1\| preprotein translocase, secY subunit [Bacillus cereus G9241], gi\|4755...	0.0	[1..434]	[1..434]
gi\|42781823, gi\|... - gi\|42781823\|ref\|NP_979070.1\| preprotein translocase subunit SecY [Bacillus cereus ATCC 10987], gi\|42...	0.0	[1..434]	[1..434]
gi\|29896413, gi\|... - gi\|30020861\|ref\|NP_832492.1\| preprotein translocase subunit SecY [Bacillus cereus ATCC 14579], gi\|29...	0.0	[1..434]	[1..434]
gi\|163862564, gi... - gi\|89209485\|ref\|ZP_01187893.1\| SecY protein [Bacillus weihenstephanensis KBAB4], gi\|89152587\|gb\|EAR7...	0.0	[1..434]	[1..434]
gi\|170125637, gi... - gi\|170709453\|ref\|ZP_02899858.1\| preprotein translocase, SecY subunit [Bacillus anthracis str. A0389]... gi\|170689725, gi... - gi\|170689725\|ref\|ZP_02880898.1\| preprotein translocase, SecY subunit [Bacillus anthracis str. A0465]... gi\|190569429, gi... - gi\|190569429\|ref\|ZP_03022312.1\| preprotein translocase, SecY subunit [Bacillus anthracis Tsiankovski... gi\|227005272, gi... - gi\|227812803\|ref\|YP_002812812.1\| preprotein translocase, SecY subunit [Bacillus anthracis str. CDC 6... gi\|177656217, gi... - gi\|177656217\|ref\|ZP_02937179.1\| preprotein translocase, SecY subunit [Bacillus anthracis str. A0174]... gi\|229604655, gi... - gi\|229604655\|ref\|YP_002864781.1\| preprotein translocase, SecY subunit [Bacillus anthracis str. A0248... gi\|51978559, gi\|... - gi\|52145090\|ref\|YP_081741.1\| preprotein translocase subunit SecY [Bacillus cereus E33L], gi\|51978559... gi\|221237948, gi... - gi\|222093900\|ref\|YP_002527950.1\| preprotein translocase, SecY subunit [Bacillus cereus Q1], gi\|22123... gi\|254686629 - gi\|254686629\|ref\|ZP_05150488.1\| preprotein translocase subunit SecY [Bacillus anthracis str. CNEVA-9... gi\|217066086, gi... - gi\|217957705\|ref\|YP_002336249.1\| preprotein translocase, SecY subunit [Bacillus cereus AH187], gi\|21... gi\|254726291 - gi\|254726291\|ref\|ZP_05188073.1\| preprotein translocase subunit SecY [Bacillus anthracis str. A1055] gi\|254735296 - gi\|254735296\|ref\|ZP_05193004.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Western... gi\|254739488 - gi\|254739488\|ref\|ZP_05197186.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Kruger ... gi\|254751240 - gi\|254751240\|ref\|ZP_05203278.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Vollum] gi\|254756851 - gi\|254756851\|ref\|ZP_05208879.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Austral... gi\|49183164, gi\|... - gi\|49183164\|ref\|YP_026416.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Sterne], g... gi\|49328277, gi\|... - gi\|49476721\|ref\|YP_034482.1\| preprotein translocase subunit SecY [Bacillus thuringiensis serovar kon... gi\|42779211, gi\|... - gi\|42779211\|ref\|NP_976458.1\| preprotein translocase subunit SecY [Bacillus cereus ATCC 10987], gi\|42... gi\|50196910, gi\|... - gi\|50196910\|ref\|YP_016735.2\| preprotein translocase subunit SecY [Bacillus anthracis str. 'Ames Ance... gi\|65317579, gi\|... - gi\|65317579\|ref\|ZP_00390538.1\| COG0201: Preprotein translocase subunit SecY [Bacillus anthracis str.... gi\|30260321, gi\|... - gi\|30260321\|ref\|NP_842698.1\| preprotein translocase subunit SecY [Bacillus anthracis str. Ames], gi\|... gi\|47570527, gi\|... - gi\|47570527\|ref\|ZP_00241154.1\| preprotein translocase, secY subunit [Bacillus cereus G9241], gi\|4755...	0.0	[1..432]	[1..433]
gi\|74316443, gi\|... - gi\|74316443\|ref\|YP_314183.1\| preprotein translocase subunit SecY [Thiobacillus denitrificans ATCC 25...	0.0	[10..434]	[10..429]

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Predicted Domain #1

Region A:
Residues: [1-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTISNFMR VAEIRRKILF TLAMLIVFRI GTFIPVPHTN AEVLKIQDQA NVLGMLNVFG  60
   61 GGALQHFSIF AVGITPYITA SIIVQLLQMD VIPKFSEWAK QGEMGRKKSA QFTRYFTIIL 120
  121 AFIQAIGMSY GFNNIAGGQL ITDQSWTTYL FIATVLTAGT AFLLWLGEQI TANGVGNGIS 180
  181 MLIFAGLVAA IPNVANQIYL QQFQNAGDQL FMHIIKMLLI GLVILAIVVG VIYIQQAVRK 240
  241 IPIQYAKAVS GNNQYQGAKN THLPLKVNSA GVIPVIFASA FLMTPRTIAQ LFPDSSVSKW 300
  301 LVANLDFAHP IGMTLYVGLI VAFTYFYAFI QVNPEQMAEN LKKQNGYVPC IRPGKSTEQY 360
  361 VTKILYRLTF IGAIFLGAIS ILPLVFTKIA TLPPSAQIGG TSLLIIVGVA LETMKTLESQ 420
  421 LVKRHYKGFI KKAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2akhY
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits