YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256900, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256900, gi|....

Description	E-value	Query Range	Subject Range
gi\|228661599, gi... - gi\|229121810\|ref\|ZP_04251030.1\| D-alanine aminotransferase [Bacillus cereus 95/8201], gi\|228661599\|g... gi\|228945876, gi... - gi\|228945876\|ref\|ZP_04108219.1\| D-alanine aminotransferase [Bacillus thuringiensis serovar monterrey... gi\|49479027, gi\|... - gi\|49479027\|ref\|YP_036368.1\| D-amino acid aminotransferase [Bacillus thuringiensis serovar konkukian... gi\|195993648, gi... - gi\|196033968\|ref\|ZP_03101379.1\| D-amino acid aminotransferase [Bacillus cereus W], gi\|195993648\|gb\|E...	7.0E-86	[1..291]	[1..291]
gi\|229091248, gi... - gi\|229091248\|ref\|ZP_04222467.1\| D-alanine aminotransferase [Bacillus cereus Rock3-42], gi\|228692102\|... gi\|51976670, gi\|... - gi\|52143201\|ref\|YP_083629.1\| D-amino acid aminotransferase [Bacillus cereus E33L], gi\|51976670\|gb\|AA...	1.0E-85	[1..291]	[1..291]
gi\|47557248, gi\|... - gi\|47565612\|ref\|ZP_00236652.1\| D-amino acid aminotransferase [Bacillus cereus G9241], gi\|47557248\|gb...	4.0E-85	[1..291]	[1..291]
gi\|42781349, gi\|... - gi\|42781349\|ref\|NP_978596.1\| D-amino acid aminotransferase [Bacillus cereus ATCC 10987], gi\|42737271...	2.0E-84	[1..291]	[1..291]
gi\|163940048, gi... - gi\|89208510\|ref\|ZP_01187013.1\| D-amino acid aminotransferase [Bacillus weihenstephanensis KBAB4], gi...	2.0E-84	[1..291]	[1..291]
gi\|29611347, gi\|... - gi\|29611347\|gb\|AAO91866.1\| D-amino acid aminotransferase 2 [Bacillus cereus], gi\|161511207\|ref\|NP_83...	8.0E-84	[1..291]	[1..291]
gi\|19888339, gi\|... - gi\|20095063\|ref\|NP_614910.1\| branched-chain amino acid aminotransferase [Methanopyrus kandleri AV19]...	2.0E-82	[5..290]	[4..291]
ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... gi\|213981032 - gi\|213981032\|ref\|ZP_03408291.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|213864754 - gi\|213864754\|ref\|ZP_03386873.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 gi\|213646697 - gi\|213646697\|ref\|ZP_03376750.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|29143717, gi\|... - gi\|29143717\|ref\|NP_807059.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|16762228 - gi\|16762228\|ref\|NP_457845.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|167553329, gi... - gi\|205322227\|gb\|EDZ10066.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 gi\|161617020, gi... - gi\|161617020\|ref\|YP_001590985.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=ilvE] [protein=branched-chain amino acid aminotransferase] [protein_id=YP_005240165.1] [locati... gi\|213425638 - gi\|213425638\|ref\|ZP_03358388.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|194713775, gi... - gi\|194738273\|ref\|YP_002116837.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... gi\|168238357, gi... - gi\|197288739\|gb\|EDY28114.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... gi\|167994598, gi... - gi\|205327552\|gb\|EDZ14316.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e...	2.0E-82	[1..291]	[1..299]
gi\|353522 - gi\|353522\|prf\|\|1104250A aminotransferase,branched chain AA	2.0E-82	[1..291]	[7..305]
gi\|30064933, gi\|... - gi\|30064933\|ref\|NP_839104.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 2... gi\|229774929 - gi\|229774929\|ref\|YP_691058.2\| branched-chain amino acid aminotransferase [Shigella flexneri 5 str. 8... gi\|24115065, gi\|... - gi\|24115065\|ref\|NP_709575.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 3...	3.0E-82	[1..291]	[1..299]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATHKDWIL FNGRIVNTKE EQPMIPLEER GFQFGDGIYE VFRLYDGKPH LLDLHLERFF  60
   61 HSMEEIKLIP PFTKEELAEE LHQMIEKNQF QEDGNVYLQI SRGAQARNHV YESNMQPTYF 120
  121 ANIVSFPRPI ATMEQGIKVT VEEDIRWKFC HIKSLNLLPN IMIKNKINEQ GYQEAILVRD 180
  181 GIVTEGCHSN FFMVKNNKLI THPADNFILH GITRHYVITL AKELHIEVEE REFSLQEVYE 240
  241 VDECFFTATP LEIFPVVQIG DEQFGNGERG PITKRLQVAY EESIRLFKVT N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.221849
Match:	1daaA
Description:	D-aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-alanine:2-oxoglutarate aminotransferase activity	5.92270586163256	bayes_pls_golite062009
branched-chain-amino-acid transaminase activity	4.40524391258229	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.8158800446404	bayes_pls_golite062009
transaminase activity	2.8068647476058	bayes_pls_golite062009
catalytic activity	2.79277628243817	bayes_pls_golite062009
4-amino-4-deoxychorismate lyase activity	2.07400020867227	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	1.88117354921159	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	1.88117354921159	bayes_pls_golite062009
transferase activity	1.36772068349993	bayes_pls_golite062009
oxo-acid-lyase activity	0.20929492402161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: