YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261877, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261877, gi|....

Description	E-value	Query Range	Subject Range
gi\|24762405, gi\|... - gi\|7291647\|gb\|AAF47069.1\| CG5549 [Drosophila melanogaster], gi\|24762405\|ref\|NP_611836.1\| CG5549 [Dro...	0.0	[2..441]	[56..572]
gi\|73988924 - gi\|73988924\|ref\|XP_854917.1\| PREDICTED: similar to Sodium- and chloride-dependent glycine transporte...	0.0	[3..442]	[298..804]
gi\|54635249, gi\|... - gi\|54635249\|gb\|EAL24652.1\| GA18963-PA [Drosophila pseudoobscura], gi\|125806587\|ref\|XP_001357528.1\| G...	0.0	[2..441]	[29..539]
gi\|47087189, gi\|... - gi\|47087189\|ref\|NP_998737.1\| solute carrier family 6 (neurotransmitter transporter, serotonin), memb...	0.0	[3..443]	[119..598]
gi\|66548818 - gi\|66548818\|ref\|XP_395197.2\| PREDICTED: similar to inebriated CG15444-PB, isoform B [Apis mellifera]	0.0	[3..442]	[300..780]
SC6A3_BOVIN - Sodium-dependent dopamine transporter OS=Bos taurus GN=SLC6A3 PE=2 SV=1	0.0	[3..444]	[60..539]
gi\|14161715, gi\|... - gi\|14161715\|emb\|CAC39181.1\| SLC6A2 [Homo sapiens], gi\|119603239\|gb\|EAW82833.1\| solute carrier family...	0.0	[3..442]	[56..537]

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Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQQWTSKL GFVLAAAGSA IGLGAIWKFP YMAGIGGGGA FFLIFIGFTL LIGLPLLLAE  60
   61 FVIGRSTQKE AVDAYREIAP KTLWPWLGKL GIVTCFILLS FYSVVGGWIL LYLWNAITGR 120
  121 LWEGNGAYEA TFGEIISNPY LAVGSQLLFI LITIFIVSKG VQNGVEKVNK YFMPALFVLF 180
  181 FVLIVRALTL DGAGEGVRFF LQPDFSNVTS EVILYAMGQS FFSLSVGVAV MVTYSSYLPK 240
  241 EESLPRSAFS IVGLTLVITL LAGLAIFPVV FAFGLEPSQG PGLLFIVLPA IFSKMAFGKV 300
  301 FFVIFLLLFF FATITSAISM LEISVASLTS KGKGKREKMA LIVGLLIFVV GVPSALSFGI 360
  361 LSDLKIFGKT VFDLADYAVS NVLMPLGVLL VSIFVPLKMK KDVLMKELGV SKNKGYKLFV 420
  421 LWLFLLRFIA PIAIIIVFLN VLGII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits