YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184611, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184611, gi|....

Description	E-value	Query Range	Subject Range
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	1.0E-58	[1..253]	[2..258]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	1.0E-56	[1..254]	[2..260]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	1.0E-56	[1..254]	[2..262]
gi\|46448340, gi\|... - gi\|46578928\|ref\|YP_009736.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. vu... gi\|241909539, gi... - gi\|241909539\|ref\|ZP_04794070.1\| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1],... gi\|120603471, gi... - gi\|120603471\|ref\|YP_967871.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. v...	4.0E-56	[1..254]	[2..258]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	5.0E-56	[2..254]	[3..260]
gi\|94731432, gi\|... - gi\|94987183\|ref\|YP_595116.1\| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1...	2.0E-55	[1..254]	[2..258]
gi\|86157777, gi\|... - gi\|86157777\|ref\|YP_464562.1\| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C], gi...	2.0E-55	[1..254]	[7..265]
gi\|166857307, gi... - gi\|76795949\|ref\|ZP_00778319.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ... gi\|241884731, gi... - gi\|241902930\|ref\|ZP_04787660.1\| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii su...	3.0E-55	[1..254]	[2..264]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	4.0E-55	[3..253]	[84..339]
gi\|82410520, gi\|... - gi\|82702455\|ref\|YP_412021.1\| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196], ...	4.0E-55	[1..254]	[2..260]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGLYIGSMG MMNYMQRINV HSNNVANAQT TGFKAENMTS KVFDVQDTYR RGDGAVTNIG  60
   61 SVDYAVVPAA THVNLVQGN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQMTNSDTDF LLDDGTAGTA SFFVTSKNNE TFLTRDGSFT LNSDRYLQTT SGAFVMGENN  60
   61 ERIRIPEGAK VAVQADGTLY DAVTQNNIAR LQTKTVGAEA NNRLIQRENK SFTLAEGNIA 120
  121 DLPNGVGTVK NYMLENSNVD MTKEMADLMT DQRMISASQR VMTSFDKIYE KEANEILR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits