YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261589, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261589, gi|....

Description	E-value	Query Range	Subject Range
gi\|25284909 - pir\|\|D83981 pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) pdhD [imported] - Bacillus ha... gi\|10175273, gi\|... - gi\|15615215\|ref\|NP_243518.1\| dihydrolipoamide dehydrogenase [Bacillus halodurans C-125], gi\|10175273...	5.0E-60	[2..318]	[8..337]
gi\|26553963, gi\|... - gi\|26553963\|ref\|NP_757897.1\| dihydrolipoamide dehydrogenase of pyruvate dehydrogenase E3 component [...	1.0E-59	[1..319]	[1..330]
gi\|120401809, gi... - gi\|90201528\|ref\|ZP_01204174.1\| Dihydrolipoamide dehydrogenase [Mycobacterium vanbaalenii PYR-1], gi\|...	2.0E-59	[1..318]	[1..332]
gi\|159901026, gi... - gi\|159901026\|ref\|YP_001547273.1\| dihydrolipoamide dehydrogenase [Herpetosiphon aurantiacus ATCC 2377...	4.0E-59	[1..320]	[1..336]
gi\|88713490, gi\|... - gi\|88713490\|ref\|ZP_01107572.1\| Dihydrolipoyl dehydrogenase [Flavobacteriales bacterium HTCC2170], gi...	8.0E-59	[1..325]	[1..340]
gi\|56964182, gi\|... - gi\|56964182\|ref\|YP_175913.1\| dihydrolipoamide dehydrogenase [Bacillus clausii KSM-K16], gi\|56910425\|...	8.0E-59	[2..317]	[8..336]
gi\|1633235, gi\|1... - gi\|1633235\|pdb\|1EBD\|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of T...	8.0E-59	[7..320]	[7..333]
DLDH_CHLMU - Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=lpdA PE=3 SV=1 DLDH_CHLMU - Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1	9.0E-59	[2..320]	[3..332]
gi\|33242193, gi\|... - gi\|33242193\|ref\|NP_877134.1\| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae TW-183], gi\|33...	1.0E-58	[2..320]	[3..329]
gi\|15836366, gi\|... - gi\|8979207\|dbj\|BAA99041.1\| lipoamide dehydrogenase [Chlamydophila pneumoniae J138], gi\|15836366\|ref\|... gi\|4377145, gi\|1... - gi\|4377145\|gb\|AAD18970.1\| Lipoamide Dehydrogenase [Chlamydophila pneumoniae CWL029], gi\|15618742\|ref... gi\|7189951, gi\|1... - gi\|7189951\|gb\|AAF38812.1\| 2-oxo acid dehydrogenase, E3 component, lipoamide dehydrogenase, putative ... DLDH_CHLPN - Dihydrolipoyl dehydrogenase OS=Chlamydia pneumoniae GN=lpdA PE=3 SV=1	1.0E-58	[2..320]	[3..329]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKETAIIIG GGPCGLAAAI SLQKVGINPL VIEKGNIVNA IYNYPTHQTF FSSSEKLEIG  60
   61 DVAFITENRK PVRNQALAYY REVVKRKSVR VNAFERVEKV QKDGEVFQVE TTKRDGSKEI 120
  121 YIAKYIVVAT EYYDNPNYMN VPGEELKKVA HYFKEGHPYF DRDVVVIGGK NSSVDAALEL 180
  181 VKAGARVTVL YRGSEYSPSI KPWILPEFEA LVRNGTIQMH FGAHVKEITE HTLTYTVDGE 240
  241 ANTIQNDFVF AMTGYHPDHS FLTKMGVRID EATGRPIYAE DTMETNAANI FIAGVIAAGN 300
  301 NANEIFIENG RFHGDAIAQT IATREI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	1ebdA
Description:	Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.93817882455555	bayes_pls_golite062009
oxidoreductase activity	1.23684145725292	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: