YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261502, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261502, gi|....

Description	E-value	Query Range	Subject Range
LEUC_BACC1 - 3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=leuC...	0.0	[1..464]	[1..464]
gi\|47566291, gi\|... - gi\|47566291\|ref\|ZP_00237319.1\| 3-isopropylmalate dehydratase, large subunit [Bacillus cereus G9241],...	0.0	[1..464]	[1..464]
LEUC_BACCZ - 3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain ZK / E33L) GN=leuC PE=3 SV=1	0.0	[1..464]	[1..464]
LEU2_BACHK, LEUC... - 3-isopropylmalate dehydratase large subunit OS=Bacillus thuringiensis subsp. konkukian GN=leuC PE=3 ... LEUC_BACHK - 3-isopropylmalate dehydratase large subunit OS=Bacillus thuringiensis subsp. konkukian (strain 97-27...	0.0	[1..464]	[1..464]
gi\|75759732, gi\|... - gi\|75759732\|ref\|ZP_00739812.1\| 3-isopropylmalate dehydratase large subunit [Bacillus thuringiensis s... gi\|228859489, gi... - gi\|228900083\|ref\|ZP_04064316.1\| 3-isopropylmalate dehydratase large subunit [Bacillus thuringiensis ... LEUC_BACC2 - 3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain G9842) GN=leuC PE=3 SV=1	0.0	[1..464]	[1..464]
gi\|229166343, gi... - gi\|229166343\|ref\|ZP_04294100.1\| 3-isopropylmalate dehydratase large subunit [Bacillus cereus AH621],... LEUC_BACWK - 3-isopropylmalate dehydratase large subunit OS=Bacillus weihenstephanensis (strain KBAB4) GN=leuC PE... gi\|228750480, gi... - gi\|229010806\|ref\|ZP_04168003.1\| 3-isopropylmalate dehydratase large subunit [Bacillus mycoides DSM 2... gi\|229132308, gi... - gi\|229132308\|ref\|ZP_04261162.1\| 3-isopropylmalate dehydratase large subunit [Bacillus cereus BDRD-ST... gi\|228720184, gi... - gi\|229057134\|ref\|ZP_04196525.1\| 3-isopropylmalate dehydratase large subunit [Bacillus cereus AH603],...	0.0	[1..464]	[1..464]
LEUC_BACCR - 3-isopropylmalate dehydratase large subunit OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 215... gi\|229126817, gi... - gi\|229126817\|ref\|ZP_04255829.1\| 3-isopropylmalate dehydratase large subunit [Bacillus cereus BDRD-Ce... gi\|228633733, gi... - gi\|229149702\|ref\|ZP_04277932.1\| 3-isopropylmalate dehydratase large subunit [Bacillus cereus m1550],... gi\|228957778, gi... - gi\|228957778\|ref\|ZP_04119519.1\| 3-isopropylmalate dehydratase large subunit [Bacillus thuringiensis ...	0.0	[1..464]	[1..464]
gi\|7707823, gi\|1... - gi\|7707823\|dbj\|BAA95425.1\| 3-isopropylmalate dehydratase [Buchnera aphidicola str. APS (Acyrthosipho...	0.0	[1..460]	[5..473]
LEUC_BACCN - 3-isopropylmalate dehydratase large subunit OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 /...	0.0	[1..464]	[1..464]
LEUC_BUCAI, LEU2... - 3-isopropylmalate dehydratase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=leu... LEUC_BUCAI - 3-isopropylmalate dehydratase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strai...	0.0	[1..460]	[1..469]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRLLDKLW ERHVVTTNEN GLDLLYIDLH LVHEVTSPQA FEGLRLTNRT VRRPDLTFAT  60
   61 MDHNIPTKDV WNITDRIAKQ QLDTLRENCK QFQVPLADIG DEEQGIVHVI GPELGLTQPG 120
  121 KTIVCGDSHT ATHGAFGALA FGIGTSEVEH VLATQTLWQR KPKAMGIELK GKLQKGVYAK 180
  181 DIILHLLSKY GVAVGTGYVM EFYGETIGTM EMEERMTLCN MAIEGGAKAG IIAPDEKTFA 240
  241 YVKGRKYAPR DYETFEKKWF ELYTDADAIY DLHISIDVTD LAPYVTWGTN PSMGVRIDEK 300
  301 LPEKHDVNDE RAFSYMGLIP GQSTYDIPVQ HVFIGSCTNS RLSDLEIAAS VVKGRKVKEG 360
  361 VRALVVPGSK RVRDAAMQKG LHHIFEEAGF EWREPGCSMC LGMNPDQVPE GEHCASTSNR 420
  421 NFEGRQGKGA RTHLVSPAMA AAAALYGHFV DIRKESYDGA ISYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	2b3xA
Description:	Structure of an orthorhombic crystal form of human cytosolic aconitase (IRP1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-isopropylmalate dehydratase activity	11.6597692115322	bayes_pls_golite062009
catalytic activity	2.4040324437254	bayes_pls_golite062009
carbon-oxygen lyase activity	2.08349115784849	bayes_pls_golite062009
hydro-lyase activity	2.04845291489052	bayes_pls_golite062009
lyase activity	2.0080619912194	bayes_pls_golite062009
structural constituent of ribosome	0.952569345633996	bayes_pls_golite062009
aconitate hydratase activity	0.681826117995502	bayes_pls_golite062009
nucleic acid binding	0.0023376634609541	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: