YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255321, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255321, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331675, gi\|... - gi\|49480119\|ref\|YP_035591.1\| undecaprenol-phosphate-poly(glycerophosphate subunit) D-alanine transfe...	529.0	[0..1]	[391..1]
gi\|51977440, gi\|... - gi\|52143971\|ref\|YP_082857.1\| undecaprenol-phosphate-poly(glycerophosphate subunit) D-alanine transfe...	528.0	[0..1]	[391..1]
gi\|65318737, gi\|... - gi\|65318737\|ref\|ZP_00391696.1\| COG3966: Protein involved in D-alanine esterification of lipoteichoic...	526.0	[0..1]	[391..1]
gi\|29895063, gi\|... - gi\|30019519\|ref\|NP_831150.1\| protein dltD precursor [Bacillus cereus ATCC 14579], gi\|29895063\|gb\|AAP...	526.0	[0..1]	[391..1]
gi\|47556809, gi\|... - gi\|47566256\|ref\|ZP_00237284.1\| DltD protein, putative [Bacillus cereus G9241], gi\|47556809\|gb\|EAL151...	523.0	[0..1]	[391..1]
gi\|42736478, gi\|... - gi\|42780558\|ref\|NP_977805.1\| dltD protein [Bacillus cereus ATCC 10987], gi\|42736478\|gb\|AAS40413.1\| d...	521.0	[0..1]	[391..1]
gi\|89204399, gi\|... - gi\|89204399\|ref\|ZP_01182976.1\| DltD, C-terminal:DltD, N-terminal:DltD, central region [Bacillus weih...	518.0	[0..1]	[391..1]
gi\|152023645, gi... - gi\|89200863\|ref\|ZP_01179612.1\| DltD, C-terminal:DltD, N-terminal:DltD, central region [Bacillus cere...	498.0	[0..1]	[391..1]
gi\|46907203, gi\|... - gi\|46907203\|ref\|YP_013592.1\| DltD protein [Listeria monocytogenes str. 4b F2365], gi\|46880470\|gb\|AAT... gi\|47093665, gi\|... - gi\|47093665\|ref\|ZP_00231420.1\| dltD protein [Listeria monocytogenes str. 4b H7858], gi\|47017961\|gb\|E... gi\|226223589, gi... - gi\|226223589\|ref\|YP_002757696.1\| DltD protein [Listeria monocytogenes Clip81459], gi\|225876051\|emb\|C... gi\|254878373 - gi\|254878373\|ref\|ZP_05251083.1\| DltD protein [Listeria monocytogenes FSL J2-071] gi\|254823758 - gi\|254823758\|ref\|ZP_05228759.1\| DltD protein [Listeria monocytogenes FSL J1-194]	491.0	[0..1]	[390..1]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAKFGPML LALALFAVFL LIPTRFLLPL LSDEKVEQAA TSLKEEKIQS MILQQKMLAD  60
   61 PKYLPMYGSS EFARMDAFHP SNYFKV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.468521
Match:	PF04915.3
Description:	No description for PF04915.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPEGFTPFLL GRGGTQDLVH VLNFASTMDQ LKDKKMVFVL SPQWFVPQGI DETHFAPNFS  60
   61 KQQGYHFIFN DDVKPEMKKQ IAKRLLNFEI VKKETLLKIS LEGIAYDDTK YKVKALAAKP 120
  121 FAYIYRNILD RKDLFTAMFN IKPHKEKLDP SLKQMNWDEA RKHADQTGAA ESRSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.376751
Match:	PF04918.3
Description:	No description for PF04918.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYGIEDGYFN SKIKKKLKQR EGYLKNDSYD QSPEYEDLQI VLDLLKQSGA KPLFISVPVK  60
   61 GPWYDYAGFP KERRELYYKK VHEQIEKAGY PIADFSNHEY DKYFLKDHMH LGWKGWVYID 120
  121 EAIQQFYKAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.431798
Match:	PF04914.3
Description:	No description for PF04914.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits