YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255306, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255306, gi|....

Description	E-value	Query Range	Subject Range
UVRC_PSESM - UvrABC system protein C OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=uvrC PE=3 SV=1 UVRC_PSESM - UvrABC system protein C OS=Pseudomonas syringae pv. tomato GN=uvrC PE=3 SV=1	7.0E-45	[2..233]	[17..215]
UVRC_PSEA7 - UvrABC system protein C OS=Pseudomonas aeruginosa (strain PA7) GN=uvrC PE=3 SV=1	8.0E-45	[2..232]	[17..215]
gi\|16760892 - gi\|16760892\|ref\|NP_456509.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|213426360 - gi\|213426360\|ref\|ZP_03359110.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213053517 - gi\|213053517\|ref\|ZP_03346395.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|29141416, gi\|... - gi\|29141416\|ref\|NP_804758.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... gi\|213999631 - gi\|213999631\|ref\|ZP_03410366.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213650332 - gi\|213650332\|ref\|ZP_03380385.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213580419 - gi\|213580419\|ref\|ZP_03362245.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero...	9.0E-45	[3..192]	[18..182]
UVRC_SALPK - UvrABC system protein C OS=Salmonella paratyphi A (strain AKU_12601) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A GN=uvrC PE=3 SV=1	9.0E-45	[3..192]	[18..182]
UVRC_SALPC - UvrABC system protein C OS=Salmonella paratyphi C (strain RKS4594) GN=uvrC PE=3 SV=1 UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis (strain SC-B67) GN=uvrC PE=3 SV=1 UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis GN=uvrC PE=3 SV=1 gi\|238912481 - gi\|238912481\|ref\|ZP_04656318.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis GN=uvrC PE=3 SV=1	9.0E-45	[3..192]	[18..182]
UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uvrC PE=3... UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2 UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2	9.0E-45	[3..192]	[18..182]
UVRC_PSE14 - UvrABC system protein C OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=uvrC P...	1.0E-44	[2..233]	[17..215]
UVRC_PSEAB - UvrABC system protein C OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uvrC PE=3 SV=1 UVRC_PSEA8 - UvrABC system protein C OS=Pseudomonas aeruginosa (strain LESB58) GN=uvrC PE=3 SV=1 gi\|107102107 - gi\|107102107\|ref\|ZP_01366025.1\| hypothetical protein PaerPA_01003156 [Pseudomonas aeruginosa PACS2] gi\|254235571, gi... - gi\|84320553\|ref\|ZP_00968926.1\| COG0322: Nuclease subunit of the excinuclease complex [Pseudomonas ae... gi\|254241018, gi... - gi\|84326912\|ref\|ZP_00974936.1\| COG0322: Nuclease subunit of the excinuclease complex [Pseudomonas ae...	2.0E-44	[2..201]	[17..192]
UVRC_PSEAE - UvrABC system protein C OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 122... UVRC_PSEAE - UvrABC system protein C OS=Pseudomonas aeruginosa GN=uvrC PE=3 SV=1	2.0E-44	[2..201]	[17..192]
gi\|2992527 - gi\|2992527\|gb\|AAC08301.1\| DNA excision repair nuclease component [Salmonella typhimurium] gi\|2992527\|gb\|AA... - DNA excision repair nuclease component [Salmonella typhimurium]	2.0E-44	[3..192]	[18..182]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCGIYLIIN KENRKFYIGS SNNFKVRFKT HRNQLNANQH HSKHLQAAWN LYGENKFEFK  60
   61 GIIELPNDKD ILHKIEQSLL SQYYGKQYCY NGHPIARGGA LSGEKNHMY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [110-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKTHSKEVKK FLSEINTGPN NYWYDKPQHL ENMRSKITKR FHGRKHTDET KEKMSRSRKG  60
   61 KKHTKETCMK ISKAQKNQYN SGREKQKKPI VINDIYYESL AEAGRAFNVP ANTIKYRVLS 120
  121 NNFPNYQYFQ EGVETIERAS LDES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1i3jA
Description:	DNA-binding domain of intron endonuclease I-TevI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits