YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255219, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	955 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255219, gi|....

Description	E-value	Query Range	Subject Range
gi\|24111998, gi\|... - gi\|24111998\|ref\|NP_706508.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 301], gi\|2... gi\|30040356, gi\|... - gi\|30062111\|ref\|NP_836282.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 2457T], gi...	0.0	[4..939]	[2..932]
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	0.0	[4..939]	[2..932]
gi\|193070663, gi... - gi\|75234496\|ref\|ZP_00718843.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	0.0	[4..939]	[2..932]
EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|217321828, gi... - gi\|217325607\|ref\|ZP_03441691.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|218360020, gi... - gi\|218553252\|ref\|YP_002386165.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI1], ... gi\|218364410, gi... - gi\|218557641\|ref\|YP_002390554.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli S88], g... gi\|218426083, gi... - gi\|218688519\|ref\|YP_002396731.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ED1a], ... EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|218350881, gi... - gi\|218694149\|ref\|YP_002401816.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 55989],... gi\|218699080, gi... - gi\|218699080\|ref\|YP_002406709.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI39],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|218704042, gi... - gi\|218704042\|ref\|YP_002411561.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli UMN026]... ODO1_ECO57 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1 gi\|75175924, gi\|... - gi\|75175924\|ref\|ZP_00696111.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75189747, gi\|... - gi\|75189747\|ref\|ZP_00703014.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|157160205, gi... - gi\|75194884\|ref\|ZP_00704954.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|194412889, gi... - gi\|75209706\|ref\|ZP_00709914.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75229642, gi\|... - gi\|75229642\|ref\|ZP_00716179.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|191174047, gi... - gi\|75237356\|ref\|ZP_00721398.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75256435, gi\|... - gi\|75256435\|ref\|ZP_00728093.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|188495881, gi... - gi\|75511613\|ref\|ZP_00734264.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|254591272, gi... - gi\|254791872\|ref\|YP_003076709.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli O... gi\|253972696, gi... - gi\|254160795\|ref\|YP_003043903.1\| alpha-ketoglutarate decarboxylase [Escherichia coli B str. REL606],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1 gi\|253325348, gi... - gi\|254287583\|ref\|YP_003053331.1\| alpha-ketoglutarate decarboxylase [Escherichia coli BL21(DE3)], gi\|... gi\|83585343, gi\|... - gi\|83585343\|ref\|ZP_00923990.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|168750657, gi... - gi\|188015214\|gb\|EDU53336.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|242376487, gi... - gi\|251784214\|ref\|YP_002998518.1\| hypothetical protein B21_00674 [Escherichia coli BL21], gi\|24237648... gi\|238859780, gi... - gi\|238899990\|ref\|YP_002925786.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli B... gi\|237707312, gi... - gi\|237707312\|ref\|ZP_04537793.1\| oxoglutarate dehydrogenase [Escherichia sp. 3_2_53FAA], gi\|226898522... gi\|227884308, gi... - gi\|227884308\|ref\|ZP_04002113.1\| oxoglutarate dehydrogenase (succinyl-transferring) [Escherichia coli... gi\|170080392, gi... - gi\|170080392\|ref\|YP_001729712.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli s... gi\|170519246, gi... - gi\|170681528\|ref\|YP_001742826.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... gi\|195939067 - gi\|195939067\|ref\|ZP_03084449.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 str. EC4... gi\|208726152, gi... - gi\|208806351\|ref\|ZP_03248688.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208816323, gi... - gi\|208816323\|ref\|ZP_03257502.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208737127, gi... - gi\|208822934\|ref\|ZP_03263252.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|115512043, gi... - gi\|117622919\|ref\|YP_851832.1\| alpha-ketoglutarate decarboxylase [Escherichia coli APEC O1], gi\|11551... gi\|209399395, gi... - gi\|209399395\|ref\|YP_002269349.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... ODO1_ECOLI - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) - Escheri... gi\|124501513, gi... - gi\|124526819\|ref\|ZP_01698701.1\| 2-oxoglutarate dehydrogenase, E1 subunit [Escherichia coli B], gi\|12... gi\|209917976, gi... - gi\|209917976\|ref\|YP_002292060.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli SE11], ... gi\|89107583, gi\|... - gi\|89107583\|ref\|AP_001363.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli str. ... gi\|189355772, gi... - gi\|189355772\|gb\|EDU74191.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|91209759, gi\|... - gi\|91209759\|ref\|YP_539745.1\| alpha-ketoglutarate decarboxylase [Escherichia coli UTI89], gi\|91071333... gi\|168764007, gi... - gi\|189365909\|gb\|EDU84325.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|13360209, gi\|... - gi\|15830005\|ref\|NP_308778.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli O157:H7 str... gi\|189363590, gi... - gi\|189363590\|gb\|EDU82009.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|110342526, gi... - gi\|110640934\|ref\|YP_668662.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 536], gi\|1... gi\|187767229, gi... - gi\|187767229\|gb\|EDU31073.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168779209, gi... - gi\|189002698\|gb\|EDU71684.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168786879, gi... - gi\|189372978\|gb\|EDU91394.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|189376465, gi... - gi\|189376465\|gb\|EDU94881.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|170020930, gi... - gi\|170020930\|ref\|YP_001725884.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ATCC 87...	0.0	[4..939]	[2..932]
gi\|81240142, gi\|... - gi\|82775994\|ref\|YP_402341.1\| alpha-ketoglutarate decarboxylase [Shigella dysenteriae Sd197], gi\|8124...	0.0	[4..939]	[2..932]
gi\|110804647, gi... - gi\|110804647\|ref\|YP_688167.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 5 str. 8401], gi\|...	0.0	[10..939]	[11..932]
gi\|43019 - gi\|43019\|emb\|CAA25280.1\| unnamed protein product [Escherichia coli] gi\|146201 - gi\|146201\|gb\|AAA23897.1\| 2-oxoglutarate dehydrogenase [Escherichia coli K12]	0.0	[4..939]	[2..932]
gi\|15800430, gi\|... - gi\|15800430\|ref\|NP_286442.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 EDL933], gi... gi\|25284469 - gi\|25284469\|pir\|\|F85573 hypothetical protein sucA [imported] - Escherichia coli (strain O157:H7, su...	0.0	[4..939]	[2..932]
gi\|73854727, gi\|... - gi\|74311250\|ref\|YP_309669.1\| alpha-ketoglutarate decarboxylase [Shigella sonnei Ss046], gi\|73854727\|...	0.0	[4..939]	[2..932]
gi\|224467078, gi... - gi\|224582551\|ref\|YP_002636349.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|200389929, gi... - gi\|200389929\|ref\|ZP_03216540.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|194444060, gi... - gi\|194444060\|ref\|YP_002039973.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|62179310, gi\|... - gi\|62179310\|ref\|YP_215727.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|161615038, gi... - gi\|161615038\|ref\|YP_001589003.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enter...	0.0	[4..939]	[2..932]

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Predicted Domain #1

Region A:
Residues: [1-955]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRKNTTTNP WAKFHGPNLG YVIEQYDLYV TGAGSVDPEL QELFEIFGAP SFQDDVVTGD  60
   61 NTATHFSPQN TGNIEKILKV VQLVEQIRSF GHTLAHINPM EDAANGQSLL EKAMNELSDA 120
  121 DLKAIPAKTV WQDAPEGIHT ALDVIHRLKE VYTQSLAYEF SHIQDSEERA WLHQMVESNS 180
  181 LRQPLSNKKR TALLKRLTAV EGFEQFLHKT FVGQKRFSIE GVDMLVPVLD EIVLEGAKNG 240
  241 VEDVMIGMAH RGRLSVLAHV LEKPYSHMFA EFKHAKIEGA VANSGWTGDV KYHLGREQVV 300
  301 SNEEVSTRVT LANNPSHLEF VNPVVEGFAR AAQENRKKSG LPEQDTSKSF VILVHGDAAF 360
  361 PGQGIVSETL NLSRLNAYQT GGTIHVIANN AVGFTTDSYD SRSTKYSSDL AKGFDIPIVH 420
  421 VNADDPEACL AAANLAIQYR MLFKKDFLID LIGYRRYGHN EMDDPAVTQP QVYKKIKNHP 480
  481 TVRAIYADQL QAAGVLNADE IETITQFTQE QLKSDYAQVP PADTSDATIH VKVPDVVAKG 540
  541 IQPIDTGVEL DSLRAINEGL LSWPEGFNVY PKVKKILERR KDALEENGKI EWALAESLAF 600
  601 ASILQEGTPI RLTGQDSQRG TFAHRHIVLH DTDTNETYSP LHRLPNINAS FSVHNSPLSE 660
  661 AAVVGYEYGY NVFAPETLVM WEAQYGDFSN TAQALFDQYV SAGRAKWGQK SGLVLLLPHG 720
  721 YEGQGPEHSS ARPERFLQLA AENNWTVANL TSAAQYFHIL RRQASILGTE AVRPLVLMTP 780
  781 KSLLRHPLTL STANQLSEGR FQPALEQENL GTKPNKVKRL VLSTGKMAID LAAEIESGRH 840
  841 EYNLDEIHIV RIEQLYPFPA EKVQSIIKRF KNLEEIIWVQ EEPRNMGAWH YMAPILFELA 900
  901 GDKVKTGYIG RPDRSSPSGG DPFAHKAEQE LIVSHALDVK YNFRQDKLEI EVFSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits