YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255195, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255195, gi|....

Description	E-value	Query Range	Subject Range
gi\|47554139, gi\|... - gi\|47569167\|ref\|ZP_00239854.1\| sodium/proline symporter [Bacillus cereus G9241], gi\|47554139\|gb\|EAL1...	4.0E-72	[1..492]	[1..492]
gi\|30019384, gi\|... - gi\|30019384\|ref\|NP_831015.1\| Sodium/proline symporter [Bacillus cereus ATCC 14579], gi\|29894927\|gb\|A...	4.0E-72	[1..492]	[1..492]
gi\|51977570, gi\|... - gi\|52144101\|ref\|YP_082728.1\| sodium/proline symporter; osmoregulated proline transporter [Bacillus c...	1.0E-71	[1..492]	[1..492]
gi\|49477151, gi\|... - gi\|49477151\|ref\|YP_035470.1\| sodium/proline symporter; osmoregulated proline transporter [Bacillus t... gi\|218537439, gi... - gi\|218902432\|ref\|YP_002450266.1\| sodium/proline symporter family protein [Bacillus cereus AH820], gi... gi\|196035341, gi... - gi\|196035341\|ref\|ZP_03102746.1\| sodium/proline symporter family protein [Bacillus cereus W], gi\|1959...	3.0E-71	[1..492]	[1..492]
gi\|91084087 - gi\|91084087\|ref\|XP_968449.1\| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]	3.0E-71	[2..480]	[8..538]
gi\|42736346, gi\|... - gi\|42780427\|ref\|NP_977674.1\| sodium/proline symporter family protein [Bacillus cereus ATCC 10987], g...	3.0E-70	[1..492]	[1..492]
gi\|89157604, gi\|... - gi\|89204543\|ref\|ZP_01183120.1\| Na+/solute symporter:Sodium/proline symporter [Bacillus weihenstephan...	4.0E-70	[1..492]	[1..492]
gi\|68009824, gi\|... - gi\|68054046\|ref\|ZP_00538211.1\| Na+/solute symporter:Sodium/proline symporter [Exiguobacterium sibiri...	2.0E-69	[8..479]	[5..475]
gi\|254738682 - gi\|254738682\|ref\|ZP_05196385.1\| sodium/proline symporter family protein [Bacillus anthracis str. Wes... gi\|254744760 - gi\|254744760\|ref\|ZP_05202438.1\| sodium/proline symporter family protein [Bacillus anthracis str. Kru... gi\|254753000 - gi\|254753000\|ref\|ZP_05205036.1\| sodium/proline symporter family protein [Bacillus anthracis str. Vol... gi\|254759271 - gi\|254759271\|ref\|ZP_05211297.1\| sodium/proline symporter family protein [Bacillus anthracis str. Aus... gi\|165871029, gi... - gi\|165871029\|ref\|ZP_02215680.1\| sodium/proline symporter family protein [Bacillus anthracis str. A04... gi\|167636327, gi... - gi\|167636327\|ref\|ZP_02394628.1\| sodium/proline symporter family protein [Bacillus anthracis str. A04... gi\|167510581, gi... - gi\|167641499\|ref\|ZP_02399748.1\| sodium/proline symporter family protein [Bacillus anthracis str. A01... gi\|170689553, gi... - gi\|170689553\|ref\|ZP_02880740.1\| sodium/proline symporter family protein [Bacillus anthracis str. A04... gi\|170709160, gi... - gi\|170709160\|ref\|ZP_02899585.1\| sodium/proline symporter family protein [Bacillus anthracis str. A03... gi\|172082190, gi... - gi\|177652516\|ref\|ZP_02934983.1\| sodium/proline symporter family protein [Bacillus anthracis str. A01... gi\|190564676, gi... - gi\|190564676\|ref\|ZP_03017597.1\| sodium/proline symporter family protein [Bacillus anthracis Tsiankov... gi\|47551902, gi\|... - gi\|47778197\|ref\|YP_020338.2\| sodium/proline symporter family protein [Bacillus anthracis str. 'Ames ... gi\|30263591, gi\|... - gi\|30263591\|ref\|NP_845968.1\| sodium/proline symporter family protein [Bacillus anthracis str. Ames],... gi\|65320916, gi\|... - gi\|65320916\|ref\|ZP_00393875.1\| COG0591: Na+/proline symporter [Bacillus anthracis str. A2012], ref\|N... gi\|227813525, gi... - gi\|227813525\|ref\|YP_002813534.1\| sodium/proline symporter family protein [Bacillus anthracis str. CD... gi\|229269198, gi... - gi\|229604790\|ref\|YP_002867834.1\| sodium/proline symporter family protein [Bacillus anthracis str. A0... gi\|254686209 - gi\|254686209\|ref\|ZP_05150068.1\| sodium/proline symporter family protein [Bacillus anthracis str. CNE... gi\|254726025 - gi\|254726025\|ref\|ZP_05187807.1\| sodium/proline symporter family protein [Bacillus anthracis str. A10...	2.0E-68	[3..491]	[1..490]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQMLTLTS ISIYMLGMLV IGYFAYKRTS NLTDYMLGGR TLGPAVTALS AGASDMSGWL  60
   61 LMGLPGAMFS VGLSSSWIAI GLTLGAYANW LYVAPRLRTY SEIANNSITI PEFLEHRFQD 120
  121 KSHMLRLVSG LVIMIFFTFY VASGLVSGAV LFENSFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYHVGLFIV AGVVVAYTLF GGFLAVSWTD FVQGIIMVIA LILVPTVTIM NVNGLGPAFS  60
   61 TIKSIDPTLL DIFKGTSVLG IISLFAWGLG YVGQPHIIVR FMAISSVKEI KSARRIGMSW 120
  121 MIFSVVGAMF TGLIGIAYYS DKGLKLSNPE TIFLELGKIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [318-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHPLITGFLL AAILAAIMST ISSQLLVTSS AITEDLYRTF FKRSASDKEL VFVGRMAVLV  60
   61 IALVGCALAF KQNDTILALV GYAWAGFGSS FGPAILLSLY WKRMTKWGAL AGMISGAATV 120
  121 IIWTQFKFLK EFLYEMIPGF TISLLVIVIV SLLTQPSKEI EEQFENFEKQ HSDNL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits