YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261187, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261187, gi|....

Description	E-value	Query Range	Subject Range
DCUP_THICR - Uroporphyrinogen decarboxylase OS=Thiomicrospira crunogena (strain XCL-2) GN=hemE PE=3 SV=1	0.0	[1..347]	[1..354]
DCUP_PSEA6 - Uroporphyrinogen decarboxylase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=hemE P...	0.0	[1..347]	[1..354]
DCUP_PSEHT - Uroporphyrinogen decarboxylase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hemE PE=3 SV=1	0.0	[1..347]	[1..354]
DCUP_SACD2 - Uroporphyrinogen decarboxylase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN...	0.0	[1..347]	[1..354]
DCUP_VIBVY - Uroporphyrinogen decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=hemE PE=3 SV=1 DCUP_VIBVU - Uroporphyrinogen decarboxylase OS=Vibrio vulnificus GN=hemE PE=3 SV=1 DCUP_VIBVU - Uroporphyrinogen decarboxylase OS=Vibrio vulnificus (strain CMCP6) GN=hemE PE=3 SV=1	0.0	[1..347]	[1..355]
EG11543 - uroporphyrinogen decarboxylase / Uroporphyrinogen decarboxylase DCUP_ECOBW - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hemE PE=3 SV=1 gi\|251787255, gi... - gi\|251787255\|ref\|YP_003001559.1\| hypothetical protein B21_03827 [Escherichia coli BL21], gi\|24237952... gi\|254290689, gi... - gi\|254290689\|ref\|YP_003056437.1\| uroporphyrinogen decarboxylase [Escherichia coli BL21(DE3)], gi\|253... DCUP_ECOSM - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hemE PE=3 SV=1 gi\|254039254, gi... - gi\|254039254\|ref\|ZP_04873303.1\| uroporphyrinogen decarboxylase [Escherichia sp. 1_1_43], gi\|22683848... DCUP_ECODH - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain K12 / DH10B) GN=hemE PE=3 SV=1 gi\|254163939, gi... - gi\|254163939\|ref\|YP_003047047.1\| uroporphyrinogen decarboxylase [Escherichia coli B str. REL606], gi... DCUP_ECOLC - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hemE PE... gi\|83584827, gi\|... - gi\|83584827\|ref\|ZP_00923487.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli 101-1],... DCUP_SHISS - Uroporphyrinogen decarboxylase OS=Shigella sonnei (strain Ss046) GN=hemE PE=3 SV=1 gi\|85676072, gi\|... - gi\|89110041\|ref\|AP_003821.1\| uroporphyrinogen decarboxylase [Escherichia coli str. K-12 substr. W311... EG11543 - uroporphyrinogen decarboxylase / Uroporphyrinogen decarboxylase DCUP_ECOLI - Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD) - Escherichia coli DCUP_ECOHS - Uroporphyrinogen decarboxylase OS=Escherichia coli O9:H4 (strain HS) GN=hemE PE=3 SV=1 DCUP_ECO8A - Uroporphyrinogen decarboxylase OS=Escherichia coli O8 (strain IAI1) GN=hemE PE=3 SV=1 gi\|194429956, gi... - gi\|75208795\|ref\|ZP_00709081.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli B171], ... DCUP_ECOSE - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain SE11) GN=hemE PE=3 SV=1 DCUP_SHIB3 - Uroporphyrinogen decarboxylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemE P... DCUP_ECO24 - Uroporphyrinogen decarboxylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hemE PE=3 SV=... DCUP_ECOLU - Uroporphyrinogen decarboxylase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemE PE=3 ... gi\|192925942, gi... - gi\|75255494\|ref\|ZP_00727293.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli E22], g... gi\|188486933, gi... - gi\|75514764\|ref\|ZP_00736993.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli 53638],... gi\|75228132, gi\|... - gi\|75228132\|ref\|ZP_00714801.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli B7A], g... gi\|193067936, gi... - gi\|75238538\|ref\|ZP_00722527.1\| COG0407: Uroporphyrinogen-III decarboxylase [Escherichia coli E110019... gi\|124498597, gi... - gi\|124531383\|ref\|ZP_01701693.1\| uroporphyrinogen decarboxylase [Escherichia coli B], gi\|124498597\|gb...	0.0	[1..347]	[1..354]
DCUP_ECOL6 - Uroporphyrinogen decarboxylase OS=Escherichia coli O6 GN=hemE PE=3 SV=1 DCUP_ECOL6 - Uroporphyrinogen decarboxylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hem... gi\|227837547, gi... - gi\|227885473\|ref\|ZP_04003278.1\| uroporphyrinogen decarboxylase [Escherichia coli 83972], gi\|22783754... sp\|B7UPF2\|DCUP_ECO27 - Uroporphyrinogen decarboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hemE PE=3 SV=... DCUP_ECOK1 - Uroporphyrinogen decarboxylase OS=Escherichia coli O1:K1 / APEC GN=hemE PE=3 SV=1 gi\|226903077, gi... - gi\|237702764\|ref\|ZP_04533245.1\| uroporphyrinogen decarboxylase [Escherichia sp. 3_2_53FAA], gi\|22690... DCUP_ECO27 - Uroporphyrinogen decarboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hemE PE=3 SV=... DCUP_ECO45 - Uroporphyrinogen decarboxylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hemE PE=3 SV=1 DCUP_ECOUT - Uroporphyrinogen decarboxylase OS=Escherichia coli (strain UTI89 / UPEC) GN=hemE PE=3 SV=1	0.0	[1..347]	[1..354]
gi\|189001799, gi... - gi\|189001799\|gb\|EDU70785.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4076], g... DCUP_ECO57 - Uroporphyrinogen decarboxylase OS=Escherichia coli O157:H7 GN=hemE PE=3 SV=1 gi\|168777390, gi... - gi\|187767364\|gb\|EDU31208.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4196], g... gi\|254595395, gi... - gi\|254795995\|ref\|YP_003080832.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. TW143... gi\|189379217, gi... - gi\|189379217\|gb\|EDU97633.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC508], gi... gi\|168790357, gi... - gi\|189370169\|gb\|EDU88585.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC869], gi... gi\|168758607, gi... - gi\|189354597\|gb\|EDU73016.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4401], g... gi\|188014036, gi... - gi\|188014036\|gb\|EDU52158.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4113], g... gi\|168771469, gi... - gi\|189359758\|gb\|EDU78177.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4486], g... gi\|168764577, gi... - gi\|189365451\|gb\|EDU83867.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4501], g... gi\|209751708, gi... - pir\|\|H91243 uroporphyrinogen decarboxylase [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|217326346, gi... - gi\|217326346\|ref\|ZP_03442430.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. TW1458... DCUP_ECO5E - Uroporphyrinogen decarboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hemE PE=3 SV=1 gi\|208728531, gi... - gi\|208808730\|ref\|ZP_03251067.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4206... gi\|195939623 - gi\|195939623\|ref\|ZP_03085005.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4024... gi\|15834174, gi\|... - gi\|15834174\|ref\|NP_312947.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. Sakai], g... gi\|208818935, gi... - gi\|208818935\|ref\|ZP_03259255.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4042... gi\|208813578, gi... - gi\|208813578\|ref\|ZP_03254907.1\| uroporphyrinogen decarboxylase [Escherichia coli O157:H7 str. EC4045...	0.0	[1..347]	[1..354]
DCUP_SHIFL - Uroporphyrinogen decarboxylase OS=Shigella flexneri GN=hemE PE=1 SV=1 gi\|24115281, gi\|... - gi\|24115281\|ref\|NP_709791.1\| uroporphyrinogen decarboxylase [Shigella flexneri 2a str. 301], gi\|2405... gi\|30064721, gi\|... - gi\|30064721\|ref\|NP_838892.1\| uroporphyrinogen decarboxylase [Shigella flexneri 2a str. 2457T], gi\|30... DCUP_SHIF8 - Uroporphyrinogen decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=hemE PE=3 SV=1	0.0	[1..347]	[1..354]
gi\|116183876, gi... - gi\|75854223\|ref\|ZP_00761930.1\| COG0407: Uroporphyrinogen-III decarboxylase [Vibrio sp. Ex25], gi\|254...	0.0	[1..347]	[1..355]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRTINETFL KACRGERTDY VPAWYMRQAG RSQPEYRKIK EKYSLFEITH NPELCAYVTK  60
   61 LPVDQYNVDA AILYKDIMSP LPAIGVDVEI KSGIGPVIDN PIRSLQDVEK LGEINPEDDV 120
  121 PYILDTIRLL TTEMLDVPLI GFSGAPFTLA SYMIEGGPSR NYHNTKAFMY AEPKAWFALI 180
  181 DKLADMVITY LKAQINAGAK AVQIFDSWVG TVNVADYRVF IKPAMERIFA EVRTMGVPMI 240
  241 MHGVGAAHLV NEWHDLPLDV VGLDWRLPIE EARARGVHKA VQGNMDPSFL LAPWSVIEEH 300
  301 VKGILDQGMK QPGYIFNLGH GVFPEVNPDT LKRLTTFIHE YSKGQLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	122.0
Match:	2infA
Description:	No description for 2infA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits