YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261171, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261171, gi|....

Description	E-value	Query Range	Subject Range
gi\|51977737, gi\|... - gi\|52144268\|ref\|YP_082560.1\| ABC transporter, permease [Bacillus cereus E33L], gi\|51977737\|gb\|AAU192...	4.0E-95	[1..403]	[1..403]
gi\|49479803, gi\|... - gi\|49479803\|ref\|YP_035308.1\| ABC transporter, permease [Bacillus thuringiensis serovar konkukian str...	7.0E-95	[1..403]	[1..403]
gi\|163938960, gi... - gi\|89205600\|ref\|ZP_01184168.1\| ABC transporter EcsB [Bacillus weihenstephanensis KBAB4], gi\|89156394...	9.0E-95	[1..403]	[1..403]
gi\|42736147, gi\|... - gi\|42780228\|ref\|NP_977475.1\| ABC transporter, permease protein EscB [Bacillus cereus ATCC 10987], gi...	6.0E-94	[1..403]	[1..403]
gi\|47555728, gi\|... - gi\|47567533\|ref\|ZP_00238244.1\| membrane protein, putative [Bacillus cereus G9241], gi\|47555728\|gb\|EA...	1.0E-93	[1..403]	[1..403]
gi\|30019206, gi\|... - gi\|30019206\|ref\|NP_830837.1\| protein ecsB [Bacillus cereus ATCC 14579], gi\|29894749\|gb\|AAP08038.1\| P...	4.0E-93	[1..403]	[1..403]
gi\|74493710, gi\|... - gi\|75758806\|ref\|ZP_00738920.1\| Protein ecsB [Bacillus thuringiensis serovar israelensis ATCC 35646],...	2.0E-92	[1..403]	[1..403]
gi\|16804253 - gi\|16804253\|ref\|NP_465738.1\| hypothetical protein lmo2214 [Listeria monocytogenes EGD-e] gi\|25365318, gi\|... - pir\|\|AF1351 ABC transporter (membrane protein) homolog lmo2214 [imported] - Listeria monocytogenes (... gi\|47097355, gi\|... - gi\|47097355\|ref\|ZP_00234909.1\| ABC transporter, permease protein [Listeria monocytogenes str. 1/2a F... gi\|127764637, gi... - gi\|153191766\|ref\|ZP_01938920.1\| ABC transporter, permease protein [Listeria monocytogenes J2818], gi... gi\|255025824 - gi\|255025824\|ref\|ZP_05297810.1\| hypothetical protein LmonocytFSL_04865 [Listeria monocytogenes FSL J...	2.0E-91	[2..402]	[6..405]
gi\|47093739, gi\|... - gi\|47093739\|ref\|ZP_00231490.1\| ABC transporter, permease protein [Listeria monocytogenes str. 4b H78...	1.0E-90	[2..402]	[6..405]
gi\|254825222 - gi\|254825222\|ref\|ZP_05230223.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J1-194... gi\|46881719, gi\|... - gi\|46908448\|ref\|YP_014837.1\| ABC transporter, permease protein [Listeria monocytogenes str. 4b F2365... gi\|255522367 - gi\|255522367\|ref\|ZP_05389604.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J1-175... gi\|254992114 - gi\|254992114\|ref\|ZP_05274304.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J2-064... gi\|254878169 - gi\|254878169\|ref\|ZP_05250879.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J2-071... gi\|133726533, gi... - gi\|153168107\|ref\|ZP_01928138.1\| ABC transporter, permease protein [Listeria monocytogenes FSL N1-017... gi\|254931673, gi... - gi\|254931673\|ref\|ZP_05265032.1\| ABC transporter, permease protein [Listeria monocytogenes HPB2262], ...	2.0E-90	[2..402]	[4..403]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTALWKER FRHFLQEVRT YSKYVFNDHL KFIFVFIIGA GAYYYQQWLQ TLTPSFPTAL  60
   61 VMAVLLGLVL TAGSIQTLLK EADLVYLLPV EEKLKPYFTK AFLFTFMIQL YIIAIVAAAL 120
  121 APLYFQQM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQTGAAYIWI VIAFVMVKAW NLFVAWEKSF LTDQNIQRAD WFIRFILNAV FVYFLVERTS  60
   61 VMFIGGIVLL MVLYLAIMHQ MVKGKPLNWE YLISEEGKKM MLLYRIANMF VDVPALKERV 120
  121 ARRKWLDFIL SMIGEKRTYL YLYTRTFLRS GNYFGLYVRL LALGGVILYF I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [300-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLYGRFIVS LIFLYLIGYQ LLTLWKHHRM KIWLDLYPVG GEEKKKDFLT LLNAILITGS  60
   61 IIFTIIFLLA TKDFMMTGIL LVVSIVFSIG FVYQYGAKRI ERLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits