YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177682, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	472 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177682, gi|....

Description	E-value	Query Range	Subject Range
gi\|29894488, gi\|... - gi\|30018946\|ref\|NP_830577.1\| stage V sporulation protein R [Bacillus cereus ATCC 14579], gi\|29894488... gi\|218159727, gi... - gi\|218231770\|ref\|YP_002365557.1\| stage V sporulation protein R [Bacillus cereus B4264], gi\|218159727... gi\|228639995, gi... - gi\|229143493\|ref\|ZP_04271919.1\| Stage V sporulation protein R [Bacillus cereus BDRD-ST24], gi\|228639... gi\|229126200, gi... - gi\|229126200\|ref\|ZP_04255218.1\| Stage V sporulation protein R [Bacillus cereus BDRD-Cer4], gi\|228657... gi\|228802511, gi... - gi\|228957184\|ref\|ZP_04118951.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar pakist...	0.0	[1..472]	[1..472]
gi\|89154972, gi\|... - gi\|89207070\|ref\|ZP_01185618.1\| SpoVR [Bacillus weihenstephanensis KBAB4], gi\|89154972\|gb\|EAR74993.1\|...	0.0	[1..472]	[1..471]
gi\|218895816, gi... - gi\|218895816\|ref\|YP_002444227.1\| stage V sporulation protein R [Bacillus cereus G9842], gi\|218542465... gi\|228795845, gi... - gi\|228963866\|ref\|ZP_04125002.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar sotto ... gi\|74491991, gi\|... - gi\|75760526\|ref\|ZP_00740562.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar israele... gi\|228899447, gi... - gi\|228899447\|ref\|ZP_04063704.1\| Stage V sporulation protein R [Bacillus thuringiensis IBL 4222], gi\|...	0.0	[1..472]	[1..471]
gi\|228932190, gi... - gi\|228932190\|ref\|ZP_04095076.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar andalo... gi\|228925945, gi... - gi\|228925945\|ref\|ZP_04089026.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar pondic... gi\|228846212, gi... - gi\|228913461\|ref\|ZP_04077092.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar pulsie... gi\|225787783, gi... - gi\|225862746\|ref\|YP_002748124.1\| stage V sporulation protein R [Bacillus cereus 03BB102], gi\|2257877... gi\|229120407, gi... - gi\|229120407\|ref\|ZP_04249654.1\| Stage V sporulation protein R [Bacillus cereus 95/8201], gi\|22866299... gi\|229089828, gi... - gi\|229089828\|ref\|ZP_04221083.1\| Stage V sporulation protein R [Bacillus cereus Rock3-42], gi\|2286934... gi\|49331861, gi\|... - gi\|49480305\|ref\|YP_035025.1\| stage V sporulation protein R [Bacillus thuringiensis serovar konkukian... gi\|228775782, gi... - gi\|228983962\|ref\|ZP_04144152.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar tochig... gi\|51978024, gi\|... - gi\|52144555\|ref\|YP_082273.1\| stage V sporulation protein R [Bacillus cereus E33L], gi\|51978024\|gb\|AA... gi\|118476438, gi... - gi\|118476438\|ref\|YP_893589.1\| stage V sporulation protein R [Bacillus thuringiensis str. Al Hakam], ... gi\|228944513, gi... - gi\|228944513\|ref\|ZP_04106884.1\| Stage V sporulation protein R [Bacillus thuringiensis serovar monter... gi\|221238578, gi... - gi\|222094520\|ref\|YP_002528580.1\| stage V sporulation protein R [Bacillus cereus Q1], gi\|221238578\|gb... gi\|196046685, gi... - gi\|196046685\|ref\|ZP_03113908.1\| stage V sporulation protein R [Bacillus cereus 03BB108], gi\|19602239... gi\|196031506, gi... - gi\|196037264\|ref\|ZP_03104575.1\| stage V sporulation protein R [Bacillus cereus NVH0597-99], gi\|19603... gi\|228600238, gi... - gi\|229183099\|ref\|ZP_04310329.1\| Stage V sporulation protein R [Bacillus cereus BGSC 6E1], gi\|2286002... gi\|196036584, gi... - gi\|196036584\|ref\|ZP_03103978.1\| stage V sporulation protein R [Bacillus cereus W], gi\|195990784\|gb\|E...	0.0	[1..472]	[1..472]
gi\|47558075, gi\|... - gi\|47564702\|ref\|ZP_00235746.1\| stage V sporulation protein R [Bacillus cereus G9241], gi\|47558075\|gb...	0.0	[1..472]	[1..472]
gi\|152974471, gi... - gi\|89200492\|ref\|ZP_01179245.1\| SpoVR [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89151563\|gb\|E...	0.0	[1..472]	[1..470]
gi\|226946696, gi... - gi\|67155367\|ref\|ZP_00416995.1\| SpoVR [Azotobacter vinelandii AvOP], gi\|67087168\|gb\|EAM06635.1\| SpoVR... gi\|53613147, gi\|... - gi\|67155367\|ref\|ZP_00416995.1\| SpoVR [Azotobacter vinelandii AvOP], ref\|ZP_00342774.1\| COG2719: Unch...	0.0	[6..463]	[19..498]
gi\|42779929, gi\|... - gi\|42779929\|ref\|NP_977176.1\| stage V sporulation protein R [Bacillus cereus ATCC 10987], gi\|42735847...	0.0	[4..472]	[2..470]
gi\|66047860, gi\|... - gi\|66047860\|ref\|YP_237701.1\| hypothetical protein Psyr_4633 [Pseudomonas syringae pv. syringae B728a...	0.0	[6..463]	[19..498]
gi\|71735255, gi\|... - gi\|71735255\|ref\|YP_272926.1\| hypothetical protein PSPPH_0627 [Pseudomonas syringae pv. phaseolicola ...	0.0	[6..463]	[19..498]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRASDDKALQ YAIAEITEIA TGFGLDFYPM RYEICPAEII YTFGAYGMPT RFSHWSFGKQ  60
   61 FFRMKLQYDL GLSKIYELVI NSDPCYAFLL DTNSLIQNKL IVAHVLAHCD FFKNNIRFSN 120
  121 TKRDMVESMS AT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEWVKAYEHK YGKEEVETFL DAVLAIQEHI DPSLMRPKLA WSIDDLEEEE VEKKKASQYD  60
   61 DLWNLDNRNK KQERSNVRKK KKIPPQPEKD LLLFIEEYSR ELEDWQRDIL TMMREEMLYF 120
  121 WPQLETKIMN EGWASFWHQR ILREMDLTSD EAIEFAKLNA GVVQPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTSINPYYLG IKMFEDIEER YNNPTEEMKR RGVKPGSGRD KIFEVREIEW DVSFLRNYLN  60
   61 KDLVMREDMY LFQRQGKEYK VIDKEWEHVR DQLVNMRTNG GFPYLVVEDG DYLKNGELYI 120
  121 KHSYEGIELD LKYLEKVLPY LHQLWGRTVH MESIVESKGV VFSYDGKMVH RKYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits