YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49183751, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	501 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49183751, gi|....

Description	E-value	Query Range	Subject Range
gi\|52144558, gi\|... - gi\|52144558\|ref\|YP_082270.1\| spore germination protein A [Bacillus cereus E33L], gi\|51978027\|gb\|AAU1... gi\|254683037 - gi\|254683037\|ref\|ZP_05146898.1\| spore germination protein A [Bacillus anthracis str. CNEVA-9066] gi\|170666897, gi... - gi\|170689149\|ref\|ZP_02880347.1\| spore germination protein GerYA [Bacillus anthracis str. A0465], gi\|... gi\|167635967, gi... - gi\|167635967\|ref\|ZP_02394274.1\| spore germination protein GerYA [Bacillus anthracis str. A0442], gi\|... gi\|254739901 - gi\|254739901\|ref\|ZP_05197593.1\| spore germination protein A [Bacillus anthracis str. Kruger B] gi\|254725825 - gi\|254725825\|ref\|ZP_05187607.1\| spore germination protein A [Bacillus anthracis str. A1055]	0.0	[1..501]	[1..501]
gi\|196036592, gi... - gi\|196036592\|ref\|ZP_03103986.1\| spore germination protein GerYA [Bacillus cereus W], gi\|195990792\|gb... gi\|49480303, gi\|... - gi\|49480303\|ref\|YP_035022.1\| spore germination protein (GerA) [Bacillus thuringiensis serovar konkuk...	0.0	[1..501]	[1..501]
gi\|47558072, gi\|... - gi\|47564699\|ref\|ZP_00235743.1\| spore germination protein, gerA family [Bacillus cereus G9241], gi\|47...	0.0	[1..501]	[1..501]
gi\|254754978 - gi\|254754978\|ref\|ZP_05207012.1\| spore germination protein GerKA [Bacillus anthracis str. Vollum] gi\|254738752 - gi\|254738752\|ref\|ZP_05196455.1\| spore germination protein GerKA [Bacillus anthracis str. Western Nor... gi\|177652865, gi... - gi\|177652865\|ref\|ZP_02935238.1\| spore germination protein GerKA [Bacillus anthracis str. A0174], gi\|... gi\|254722091 - gi\|254722091\|ref\|ZP_05183880.1\| spore germination protein GerKA [Bacillus anthracis str. A1055] gi\|190568509, gi... - gi\|190568509\|ref\|ZP_03021415.1\| spore germination protein GerKA [Bacillus anthracis Tsiankovskii-I],... gi\|254684288 - gi\|254684288\|ref\|ZP_05148148.1\| spore germination protein GerKA [Bacillus anthracis str. CNEVA-9066] gi\|170666987, gi... - gi\|170689002\|ref\|ZP_02880202.1\| spore germination protein GerKA [Bacillus anthracis str. A0465], gi\|... gi\|170708457, gi... - gi\|170708457\|ref\|ZP_02898899.1\| spore germination protein GerKA [Bacillus anthracis str. A0389], gi\|... gi\|167529416, gi... - gi\|167635157\|ref\|ZP_02393473.1\| spore germination protein GerKA [Bacillus anthracis str. A0442], gi\|... gi\|167511140, gi... - gi\|167640920\|ref\|ZP_02399178.1\| spore germination protein GerKA [Bacillus anthracis str. A0193], gi\|... gi\|254762291 - gi\|254762291\|ref\|ZP_05214135.1\| spore germination protein GerKA [Bacillus anthracis str. Australia 9... gi\|165872946, gi... - gi\|165872946\|ref\|ZP_02217569.1\| spore germination protein GerKA [Bacillus anthracis str. A0488], gi\|... gi\|49177554, gi\|... - gi\|49183627\|ref\|YP_026879.1\| spore germination protein GerKA [Bacillus anthracis str. Sterne], gi\|49... gi\|47525914, gi\|... - gi\|47525914\|ref\|YP_017263.1\| spore germination protein GerKA [Bacillus anthracis str. 'Ames Ancestor... gi\|30260789, gi\|... - gi\|30260789\|ref\|NP_843166.1\| spore germination protein GerKA [Bacillus anthracis str. Ames], gi\|3025... gi\|21398593 - ref\|NP_654578.1\| hypothetical protein BA_1218 [Bacillus anthracis str. A2012] gi\|229604871, gi... - gi\|229604871\|ref\|YP_002865233.1\| spore germination protein GerKA [Bacillus anthracis str. A0248], gi... gi\|227816495, gi... - gi\|227816495\|ref\|YP_002816504.1\| spore germination protein GerKA [Bacillus anthracis str. CDC 684], ...	0.0	[6..501]	[10..500]
gi\|74493119, gi\|... - gi\|75759407\|ref\|ZP_00739502.1\| Spore germination protein KA [Bacillus thuringiensis serovar israelen... gi\|228860351, gi... - gi\|228899320\|ref\|ZP_04063583.1\| Spore germination protein KA [Bacillus thuringiensis IBL 4222], gi\|2...	0.0	[5..501]	[12..503]
gi\|65318060 - gi\|65318060\|ref\|ZP_00391019.1\| COG0477: Permeases of the major facilitator superfamily [Bacillus ant... gi\|228827645, gi... - gi\|228932062\|ref\|ZP_04094954.1\| Spore germination protein KA [Bacillus thuringiensis serovar andalou...	0.0	[6..501]	[13..503]
gi\|89207073, gi\|... - gi\|89207073\|ref\|ZP_01185621.1\| GerA spore germination protein [Bacillus weihenstephanensis KBAB4], g...	0.0	[1..501]	[1..501]
gi\|30018820, gi\|... - gi\|30018820\|ref\|NP_830451.1\| spore germination protein KA [Bacillus cereus ATCC 14579], gi\|29894362\|...	0.0	[6..501]	[10..500]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLSSKKKK QTFCSIPDFI HAMKKSSDFS SYNIIEDGTL CLFYYKSTVE SLIIKRFILA  60
   61 PIKNKLDEIQ HIDDILNVVS IEDTLINPSI DDIREKLLGG YVLLQLKKGS GQAAYALLRA 120
  121 ESTVLGTRLV NDTENEYSVI GPKVGFVENV DINIHLLRRN IVTEQLIFKE VSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [174-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSMSKTKIVV AYIEGITNEQ HINTAMQRLQ DIDFDYPFDA TLVEQLISDN SNSPFRVLLP  60
   61 TERLDRSVYA LLNGGVVILT DGSPYALAGP ATLLDFFVSP EDYYLPW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [281-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAGSFLRLVR FFGAAFSLFS SAIYTAVLTY HYQMIPADLL GPIIYSRANV PFPPVLEALF  60
   61 LEITIELLRE AGARLPTKVG QTIGIVGGIV IGQASVEAAL TSTILLIAVA LSALASFTTP 120
  121 TVKMSSTIRI LRFPLIILAG AFGGVGLIVG FVFILAHLIH LKSLGSPYLL PLYPFRGLGT 180
  181 AEGLLRLPFS QTAERASFLR PKKKWRYDPN KAKEKRDGEE K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits