YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260878, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260878, gi|....

Description	E-value	Query Range	Subject Range
gi\|163860849, gi... - gi\|89207102\|ref\|ZP_01185650.1\| FAD dependent oxidoreductase [Bacillus weihenstephanensis KBAB4], gi\|...	8.0E-69	[1..364]	[1..364]
gi\|29894448, gi\|... - gi\|30018906\|ref\|NP_830537.1\| glycine oxidase [Bacillus cereus ATCC 14579], gi\|29894448\|gb\|AAP07738.1...	8.0E-69	[1..369]	[1..369]
gi\|47564662, gi\|... - gi\|47564662\|ref\|ZP_00235706.1\| oxidoreductase, FAD-binding, putative [Bacillus cereus G9241], gi\|475...	1.0E-68	[1..364]	[1..364]
gi\|42779877, gi\|... - gi\|42779877\|ref\|NP_977124.1\| glycine oxidase [Bacillus cereus ATCC 10987], gi\|42735794\|gb\|AAS39732.1...	2.0E-68	[1..364]	[1..364]
gi\|89203239, gi\|... - gi\|89203239\|ref\|ZP_01181927.1\| FAD dependent oxidoreductase [Bacillus cereus subsp. cytotoxis NVH 39...	1.0E-67	[1..364]	[1..364]
gi\|49331837, gi\|... - gi\|49480281\|ref\|YP_034985.1\| glycine oxidase [Bacillus thuringiensis serovar konkukian str. 97-27], ...	2.0E-67	[1..364]	[1..364]
gi\|52144583, gi\|... - gi\|52144583\|ref\|YP_082245.1\| glycine oxidase [Bacillus cereus E33L], gi\|51978052\|gb\|AAU19602.1\| glyc...	3.0E-67	[1..364]	[1..364]
gi\|68511886, gi\|... - gi\|68561944\|ref\|ZP_00601225.1\| FAD dependent oxidoreductase [Rubrobacter xylanophilus DSM 9941], gi\|...	5.0E-60	[5..364]	[7..367]
gi\|25490187 - pir\|\|A83905 hypothetical protein BH2041 [imported] - Bacillus halodurans (strain C-125) gi\|10174660, gi\|... - gi\|15614604\|ref\|NP_242907.1\| hypothetical protein BH2041 [Bacillus halodurans C-125], gi\|10174660\|db...	9.0E-59	[1..368]	[1..369]
gi\|88925520, gi\|... - gi\|88944849\|ref\|ZP_01148072.1\| proline dehydrogenase, beta subunit [Desulfotomaculum reducens MI-1],...	1.0E-58	[1..368]	[1..369]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKKYDVAII GGGVIGSSVA HFLAERGHKV AIVEKQQIAS EASKAAAGLL GVQAEWDEYD  60
   61 PLFDLARESR AIFPQLAEVL REKTGIDIGY EEKGIYRIAQ NEDEKERILH IMDWQQKTGE 120
  121 DSYFLTGDRL REQEPYLSES IIGAVYYPKD GHVIAPELTK AFAHSAAISG ADIYEQTEVF 180
  181 DIRIENKKVI GIVTSEGMIS CEKVVIAGGS WSTKLLGYFH REWGTYPVKG EVVAVKSRKQ 240
  241 LLKAPIFQER FYIAPKRGGR YVIGATMKPH TFNKTVQPES ITSILERAYT ILPALKEAEW 300
  301 ESTWAGLRPQ SNHEAPYMGE HEEIKGLYAC TGHYRNGILL SPVSGQYMAD LIEGKQENHL 360
  361 LDSLLSKTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1ryiA
Description:	STRUCTURE OF GLYCINE OXIDASE WITH BOUND INHIBITOR GLYCOLATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.05346889689984	bayes_pls_golite062009
catalytic activity	1.93817882455555	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	0.976190851979799	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.47379157470587	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: