YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49183700, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49183700, gi|....

Description	E-value	Query Range	Subject Range
GERKA_BACSU - Spore germination protein KA OS=Bacillus subtilis (strain 168) GN=gerKA PE=3 SV=2 GRKA_BACSU, GERK... - (P49939) Spore germination protein KA, Spore germination protein KA OS=Bacillus subtilis GN=gerKA PE... gi\|221312506 - gi\|221312506\|ref\|ZP_03594311.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221317443 - gi\|221317443\|ref\|ZP_03598737.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221321705 - gi\|221321705\|ref\|ZP_03602999.1\| germination response to the combination of glucose, fructose, L-aspa...	0.0	[1..477]	[44..521]
gi\|1063254, gi\|2... - pir\|\|I39858 germination response gerKA protein - Bacillus subtilis, gi\|1063254\|dbj\|BAA11254.1\| GerK...	0.0	[1..477]	[46..523]
gi\|83573786, gi\|... - gi\|83590872\|ref\|YP_430881.1\| GerA spore germination protein [Moorella thermoacetica ATCC 39073], gi\|...	0.0	[1..473]	[62..539]
gi\|2204284 - gi\|2204284\|gb\|AAB61393.1\| germination protein	0.0	[1..478]	[38..518]
gi\|47564272, gi\|... - gi\|47564272\|ref\|ZP_00235317.1\| YndD [Bacillus cereus G9241], gi\|47558424\|gb\|EAL16747.1\| YndD [Bacill...	0.0	[1..474]	[42..524]
gi\|51975858, gi\|... - gi\|52142389\|ref\|YP_084440.1\| spore germination protein [Bacillus cereus E33L], gi\|51975858\|gb\|AAU174...	0.0	[1..474]	[42..524]
gi\|56420159, gi\|... - gi\|56420159\|ref\|YP_147477.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5638000...	0.0	[1..478]	[43..524]
gi\|20517386, gi\|... - gi\|20808743\|ref\|NP_623914.1\| germination protein [Thermoanaerobacter tengcongensis MB4], gi\|20517386... gi\|20808743 - gi\|20808743\|ref\|NP_623914.1\| germination protein [Thermoanaerobacter tengcongensis MB4] gi\|254479498, gi... - gi\|254479498\|ref\|ZP_05092821.1\| hypothetical protein CDSM653_1197 [Carboxydibrachium pacificum DSM 1...	0.0	[6..477]	[33..510]
gi\|75763164, gi\|... - gi\|75763164\|ref\|ZP_00742933.1\| Spore germination protein BA [Bacillus thuringiensis serovar israelen...	0.0	[1..469]	[40..517]
gi\|106774680, gi... - gi\|158319340\|ref\|YP_001511847.1\| GerA spore germination protein [Alkaliphilus oremlandii OhILAs], gi...	0.0	[1..478]	[32..519]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIRDELGS PNDLTIREVA LAGSFTRCAV VFLCGLTDKD NVYKYVVRTL QYEEIQKDEA  60
   61 VVQTLLDRFI SIAEVGKKTT FPDIINAILA GDTVILIDNI QTAIVINSRA WEKRSLESPV 120
  121 TEDLIRGPRI GLNEDINVNK MLIRRSLRDP KLRFQSYIM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRSQKEVTL VYIEDIINPY IVKELDRRLQ SIVTDVVFET GTIEQLIQDN NLSPFPQFLN  60
   61 TERPDNIVAS LAKGKAAILV DGSPFALIAP LVFVDIFQSV EDHYERW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [267-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIGTLLRILR MGSGIVAILM PAMYVALVSY HQGLIPSKLA YSIAGAREGV PFPAYIETLM  60
   61 MALTMELIRE AGIRLPKPMG QTIGIVGGLV IGEAAVNAGI VNPFLVIIIA VTAIATFSLP 120
  121 VYSITITFRI LLFVFVLAAT AFGLYGIILA LIALAVHITN LTSVGVPYTT PIAPAFYKDW 180
  181 KEEFIRMPKS MLKERPEYLQ TKDSTVRPKE RE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits