YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177612, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177612, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	2.0E-61	[2..429]	[143..563]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	1.0E-57	[1..428]	[32..452]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	3.0E-57	[1..428]	[27..447]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	6.0E-56	[1..428]	[27..447]
SULH2_SCHPO - Probable sulfate permease C869.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869... SPAC869.05c - sulfate transporter	1.0E-54	[1..398]	[106..528]
gi\|211585935 - gi\|211585935\|emb\|CAP93672.1\| sulfate permease SutB-Penicillium chrysogenum [Penicillium chrysogenum ... gi\|6502992 - gi\|6502992\|gb\|AAF14539.1\|AF163974_1 sulfate permease SutB [Penicillium chrysogenum]	1.0E-54	[5..407]	[91..514]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	2.0E-54	[2..429]	[24..446]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	3.0E-54	[2..429]	[24..446]
gi\|19743668 - gi\|19743668\|gb\|AAL92573.1\| putative xanthine/uracil permease [Delftia acidovorans]	5.0E-54	[1..429]	[7..428]
gi\|11279010 - pir\|\|D81776 conserved hypothetical protein NMA2056 [imported] - Neisseria meningitidis (strain Z2491... gi\|15794934, gi\|... - gi\|7380684\|emb\|CAB85274.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187688...	5.0E-54	[1..429]	[12..433]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQLQKYNTS VKQEFLAGIT TFFTFAYILV INPKILSDAG VPFDQAFTAT IIATVVGTIG  60
   61 MAIFANYPIV IAPAMGMNAY FAYSVVQKAE GITYVIAFSA VFVTGIIFLL LSFTSFRQKL 120
  121 ILAIPDSLKH AIAGGIGLFI AFIGLRLFGI IVDHPSNLVT IGDFHS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAVILTLIGL ILAAVLMALR VSGALFISMI VTGVIAFFTG QLKFTDKIVA MPHLPEGIIV  60
   61 SNPINAFSDV IEYGLYGVVF SFLLVLLFDT TGALLGLIKQ AGLITDNTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [276-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRFGKAFIAD AIGGTTGSIF GTSPTAATIE SSAGIAAGGK TGLTGIVVVG LTIITAFFSP  60
   61 VIASLSSVAA ITAPSLIIVG SLMAQSIRDI NWNEFEDALP AFLIFVGIPL TSSIANGIAI 120
  121 GFLVYPVLKI VKGKGMEVHP LLYLFTILFG CHLFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits