YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177554, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177554, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331778, gi\|... - gi\|49480222\|ref\|YP_034893.1\| spore germination protein KA [Bacillus thuringiensis serovar konkukian ... gi\|218538261, gi... - gi\|218901830\|ref\|YP_002449664.1\| spore germination protein GerKA [Bacillus cereus AH820], gi\|2185382... gi\|195991689, gi... - gi\|196035722\|ref\|ZP_03103125.1\| spore germination protein GerKA [Bacillus cereus W], gi\|195991689\|gb... gi\|228815289, gi... - gi\|228944387\|ref\|ZP_04106760.1\| Spore germination protein KA [Bacillus thuringiensis serovar monterr...	0.0	[1..500]	[1..500]
gi\|51978145, gi\|... - gi\|52144676\|ref\|YP_082152.1\| spore germination protein KA [Bacillus cereus E33L], gi\|51978145\|gb\|AAU...	0.0	[1..500]	[1..500]
gi\|65318060 - gi\|65318060\|ref\|ZP_00391019.1\| COG0477: Permeases of the major facilitator superfamily [Bacillus ant... gi\|228827645, gi... - gi\|228932062\|ref\|ZP_04094954.1\| Spore germination protein KA [Bacillus thuringiensis serovar andalou...	0.0	[1..500]	[4..503]
gi\|30018820, gi\|... - gi\|30018820\|ref\|NP_830451.1\| spore germination protein KA [Bacillus cereus ATCC 14579], gi\|29894362\|...	0.0	[1..500]	[1..500]
gi\|74493119, gi\|... - gi\|75759407\|ref\|ZP_00739502.1\| Spore germination protein KA [Bacillus thuringiensis serovar israelen... gi\|228860351, gi... - gi\|228899320\|ref\|ZP_04063583.1\| Spore germination protein KA [Bacillus thuringiensis IBL 4222], gi\|2...	0.0	[1..500]	[4..503]
gi\|228651885, gi... - gi\|229131577\|ref\|ZP_04260461.1\| Spore germination protein KA [Bacillus cereus BDRD-ST196], gi\|228651... gi\|163938558, gi... - gi\|89206154\|ref\|ZP_01184716.1\| GerA spore germination protein [Bacillus weihenstephanensis KBAB4], g...	0.0	[1..500]	[1..500]
gi\|47568083, gi\|... - gi\|47568083\|ref\|ZP_00238788.1\| spore germination protein KA [Bacillus cereus G9241], gi\|47555237\|gb\|...	0.0	[1..500]	[1..500]
GERKA_BACSU - Spore germination protein KA OS=Bacillus subtilis (strain 168) GN=gerKA PE=3 SV=2 GRKA_BACSU, GERK... - (P49939) Spore germination protein KA, Spore germination protein KA OS=Bacillus subtilis GN=gerKA PE... gi\|221312506 - gi\|221312506\|ref\|ZP_03594311.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221317443 - gi\|221317443\|ref\|ZP_03598737.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221321705 - gi\|221321705\|ref\|ZP_03602999.1\| germination response to the combination of glucose, fructose, L-aspa...	0.0	[2..499]	[22..543]
gi\|1063254, gi\|2... - pir\|\|I39858 germination response gerKA protein - Bacillus subtilis, gi\|1063254\|dbj\|BAA11254.1\| GerK...	0.0	[2..499]	[24..545]
gi\|83573786, gi\|... - gi\|83590872\|ref\|YP_430881.1\| GerA spore germination protein [Moorella thermoacetica ATCC 39073], gi\|...	0.0	[2..486]	[29..539]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQKEQQES TGQKHMFPSL PENINYIENK LCHSDDIKKL DLPFQNGKGT ILYIESLADP  60
   61 NLIHQLALEP LLTRSDLSLD KAFATLNMKK ETNLNYGVQL LLQGKSLYFH EHVDSFCIFE 120
  121 TAISLKRDIA EPDNEGIVRG PHTGFVEDLA TNLTSIRKLI KSPNIVVKYF TLGEEMHTKV 180
  181 AIAYMQNIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDDLVTEVKR RLETIKTDAL MPPGYIQEFI EDTSFSPFPQ QLNTERPDRV AANLMEGRVA  60
   61 IFSDGDPTAL IVPVTLFAFY QSPDDYNNRW IVGSFVRMIR LVSFLIAFLL PAIYIATVAF 120
  121 HPDVLPLELV YTIKASLEKV PLPPIFEALL MELIFELLRE AGIRLPSRVG QTIGIVGGLV 180
  181 IGDAIVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [377-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGLVSYTMII VVALTAISSF LVPSNDMSSA VRILRFPLML LAALFGYVGI SFGLIITFVH  60
   61 LCQLHSFHTP YLSPVAPMRI KDMKDSFVRL PIWSFWERPH DPKPKKMQRQ HVTREEEDGD 120
  121 KHAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits