YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177552, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177552, gi|....

Description	E-value	Query Range	Subject Range
gi\|52144678, gi\|... - gi\|52144678\|ref\|YP_082150.1\| spore germination protein KC [Bacillus cereus E33L], gi\|51978147\|gb\|AAU...	9.0E-94	[1..374]	[1..374]
gi\|49479849, gi\|... - gi\|49479849\|ref\|YP_034891.1\| spore germination protein [Bacillus thuringiensis serovar konkukian str...	2.0E-93	[1..374]	[1..374]
gi\|29894360, gi\|... - gi\|30018818\|ref\|NP_830449.1\| spore germination protein KC [Bacillus cereus ATCC 14579], gi\|29894360\|...	3.0E-93	[1..374]	[1..374]
gi\|42779779, gi\|... - gi\|42779779\|ref\|NP_977026.1\| spore germination protein GerKC [Bacillus cereus ATCC 10987], gi\|427356...	6.0E-92	[1..374]	[1..374]
gi\|89897223, gi\|... - gi\|89897223\|ref\|YP_520710.1\| hypothetical protein DSY4477 [Desulfitobacterium hafniense Y51], gi\|893... gi\|68168096, gi\|... - gi\|68208002\|ref\|ZP_00560141.1\| Spore germination B3 GerAC like, C-terminal [Desulfitobacterium hafni...	5.0E-90	[1..373]	[1..380]
gi\|163938556, gi... - gi\|89206152\|ref\|ZP_01184714.1\| Spore germination B3 GerAC like, C-terminal [Bacillus weihenstephanen...	6.0E-90	[1..374]	[1..374]
gi\|10174553, gi\|... - gi\|15614498\|ref\|NP_242801.1\| spore germination protein KC [Bacillus halodurans C-125], gi\|10174553\|d... gi\|25494783 - pir\|\|G83891 spore germination protein KC gerKC [imported] - Bacillus halodurans (strain C-125)	3.0E-84	[1..371]	[1..391]
gi\|190560634, gi... - gi\|190568378\|ref\|ZP_03021286.1\| spore germination protein GerHC [Bacillus anthracis Tsiankovskii-I],... gi\|227005961, gi... - gi\|227817528\|ref\|YP_002817537.1\| spore germination protein GerHC [Bacillus anthracis str. CDC 684], ... gi\|229267920, gi... - gi\|229603512\|ref\|YP_002869011.1\| spore germination protein GerHC [Bacillus anthracis str. A0248], gi... gi\|167530841, gi... - gi\|167634040\|ref\|ZP_02392363.1\| spore germination protein GerHC [Bacillus anthracis str. A0442], gi\|... gi\|254687543 - gi\|254687543\|ref\|ZP_05151399.1\| spore germination protein GerHC [Bacillus anthracis str. CNEVA-9066] gi\|165869819, gi... - gi\|165869819\|ref\|ZP_02214477.1\| spore germination protein GerHC [Bacillus anthracis str. A0488], gi\|... gi\|254725108 - gi\|254725108\|ref\|ZP_05186891.1\| spore germination protein GerHC [Bacillus anthracis str. A1055] gi\|49187624, gi\|... - gi\|49187624\|ref\|YP_030877.1\| spore germination protein GerHC [Bacillus anthracis str. Sterne], gi\|49... gi\|170685942, gi... - gi\|170685942\|ref\|ZP_02877165.1\| spore germination protein GerHC [Bacillus anthracis str. A0465], gi\|... gi\|254736846 - gi\|254736846\|ref\|ZP_05194552.1\| spore germination protein GerHC [Bacillus anthracis str. Western Nor... gi\|47530285, gi\|... - gi\|47530285\|ref\|YP_021634.1\| spore germination protein GerHC [Bacillus anthracis str. 'Ames Ancestor... gi\|167638224, gi... - gi\|167638224\|ref\|ZP_02396502.1\| spore germination protein GerHC [Bacillus anthracis str. A0193], gi\|... gi\|254741881 - gi\|254741881\|ref\|ZP_05199568.1\| spore germination protein GerHC [Bacillus anthracis str. Kruger B] gi\|30264803, gi\|... - gi\|30264803\|ref\|NP_847180.1\| spore germination protein GerHC [Bacillus anthracis str. Ames], gi\|3025... gi\|172082908, gi... - gi\|177651082\|ref\|ZP_02933913.1\| spore germination protein GerHC [Bacillus anthracis str. A0174], gi\|... gi\|254754521 - gi\|254754521\|ref\|ZP_05206556.1\| spore germination protein GerHC [Bacillus anthracis str. Vollum] gi\|65322104, gi\|... - gi\|65322104\|ref\|ZP_00395063.1\| hypothetical protein Bant_01005632 [Bacillus anthracis str. A2012], r... gi\|170705449, gi... - gi\|170705449\|ref\|ZP_02895913.1\| spore germination protein GerHC [Bacillus anthracis str. A0389], gi\|... gi\|254757353 - gi\|254757353\|ref\|ZP_05209380.1\| spore germination protein GerHC [Bacillus anthracis str. Australia 9...	5.0E-82	[1..374]	[1..359]
gi\|47557946, gi\|... - gi\|47565160\|ref\|ZP_00236203.1\| spore germination protein IC [Bacillus cereus G9241], gi\|47557946\|gb\|...	2.0E-81	[1..374]	[1..359]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKRVKLLF ILCTSAFLSG CWDQEPLREA RLAYSIGSDI TEENKLQQTI ELVKSSSGEQ  60
   61 ASFENEIHSA TGHNIRDTSD ALKKNVT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNIRYFKYGV QLLGTKILKK GVLPYLDVSF RDPTNPTALV KLIAVDGETS EILEKKKVGN  60
   61 LLIGDFLKKK VKSLEDMSVF PKETLETAAT KMLDPGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [185-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFTLPSIKIK GREVITNGLA LFNNDKLTGH LPLKQSVLFV LLTGKMGTSA RITQKLTSDE  60
   61 SEKTSDYLTM EVSNRKLKRD LKITTDKKGN VYAHIKLQLK VIALEAPRDN LYKMDERKKL 120
  121 NKELSKQLTK EAKKITNKLQ KANCDAFGIG RHLIAYHPDL WKKKKWNKDY AKVKFKPEVD 180
  181 VNILYSGVLK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.920819
Match:	PF05504.2
Description:	No description for PF05504.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits