YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254185, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254185, gi|....

Description	E-value	Query Range	Subject Range
gi\|77997295, gi\|... - gi\|78045180\|ref\|YP_360201.1\| NAD-dependent malic enzyme [Carboxydothermus hydrogenoformans Z-2901], ...	0.0	[5..398]	[3..397]
gi\|42735637, gi\|... - gi\|42779720\|ref\|NP_976967.1\| malate dehydrogenase, putative [Bacillus cereus ATCC 10987], gi\|4273563...	0.0	[1..399]	[1..399]
gi\|229143304, gi... - gi\|229143304\|ref\|ZP_04271735.1\| NAD-dependent malic enzyme 4 [Bacillus cereus BDRD-ST24], gi\|2286401... gi\|228657436, gi... - gi\|229126011\|ref\|ZP_04255034.1\| NAD-dependent malic enzyme 4 [Bacillus cereus BDRD-Cer4], gi\|2286574... gi\|229108186, gi... - gi\|229108186\|ref\|ZP_04237808.1\| NAD-dependent malic enzyme 4 [Bacillus cereus Rock1-15], gi\|22867520... gi\|228977274, gi... - gi\|228977274\|ref\|ZP_04137670.1\| NAD-dependent malic enzyme 4 [Bacillus thuringiensis Bt407], gi\|2287... gi\|229148919, gi... - gi\|229148919\|ref\|ZP_04277164.1\| NAD-dependent malic enzyme 4 [Bacillus cereus m1550], gi\|228634459\|g... gi\|228970697, gi... - gi\|228970697\|ref\|ZP_04131339.1\| NAD-dependent malic enzyme 4 [Bacillus thuringiensis serovar thuring... gi\|228937816, gi... - gi\|228937816\|ref\|ZP_04100446.1\| NAD-dependent malic enzyme 4 [Bacillus thuringiensis serovar berline... gi\|30018766, gi\|... - gi\|30018766\|ref\|NP_830397.1\| NAD-dependent malic enzyme [Bacillus cereus ATCC 14579], gi\|29894307\|gb...	0.0	[1..399]	[1..399]
gi\|47567159, gi\|... - gi\|47567159\|ref\|ZP_00237875.1\| malate oxidoreductase [Bacillus cereus G9241], gi\|47556215\|gb\|EAL1455...	0.0	[1..399]	[1..399]
gi\|49480169, gi\|... - gi\|49480169\|ref\|YP_034838.1\| malate dehydrogenase (malic enzyme) (NAD-malic enzyme) [Bacillus thurin... gi\|218901774, gi... - gi\|218901774\|ref\|YP_002449608.1\| putative malate dehydrogenase [Bacillus cereus AH820], gi\|218536227... gi\|196046792, gi... - gi\|196046792\|ref\|ZP_03114014.1\| putative malate dehydrogenase [Bacillus cereus 03BB108], gi\|19602232... gi\|225862550, gi... - gi\|225862550\|ref\|YP_002747928.1\| putative malate dehydrogenase [Bacillus cereus 03BB102], gi\|2257896... gi\|118415492, gi... - gi\|118476267\|ref\|YP_893418.1\| malate dehydrogenase [Bacillus thuringiensis str. Al Hakam], gi\|118415... gi\|228600533, gi... - gi\|229182909\|ref\|ZP_04310142.1\| NAD-dependent malic enzyme 4 [Bacillus cereus BGSC 6E1], gi\|22860053... gi\|228663271, gi... - gi\|229120230\|ref\|ZP_04249481.1\| NAD-dependent malic enzyme 4 [Bacillus cereus 95/8201], gi\|228663271... gi\|228693671, gi... - gi\|229089641\|ref\|ZP_04220903.1\| NAD-dependent malic enzyme 4 [Bacillus cereus Rock3-42], gi\|22869367... gi\|228944333, gi... - gi\|228944333\|ref\|ZP_04106706.1\| NAD-dependent malic enzyme 4 [Bacillus thuringiensis serovar monterr...	0.0	[1..399]	[1..399]
gi\|51978198, gi\|... - gi\|52144729\|ref\|YP_082099.1\| malate dehydrogenase (malic enzyme) (NAD-malic enzyme) [Bacillus cereus...	0.0	[1..399]	[1..399]
gi\|20808698 - gi\|20808698\|ref\|NP_623869.1\| Malic enzyme [Thermoanaerobacter tengcongensis MB4] gi\|20808698, gi\|... - gi\|20808698\|ref\|NP_623869.1\| malic enzyme [Thermoanaerobacter tengcongensis MB4], gi\|20517336\|gb\|AAM...	0.0	[5..394]	[2..391]
gi\|87161326, gi\|... - gi\|87161326\|ref\|YP_494342.1\| putative NADP-dependent malic enzyme [Staphylococcus aureus subsp. aure... gi\|57284758, gi\|... - gi\|57650572\|ref\|YP_186585.1\| NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aur... gi\|88195510, gi\|... - gi\|88195510\|ref\|YP_500315.1\| NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aur... gi\|150374608, gi... - gi\|151221808\|ref\|YP_001332630.1\| NADP-dependent malic enzyme, malate dehydrogenase [Staphylococcus a... gi\|161509915, gi... - gi\|161509915\|ref\|YP_001575574.1\| malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) [Stap... gi\|87161326\|ref\|... - putative NADP-dependent malic enzyme [Staphylococcus aureus subsp. aureus USA300], putative NADP-dep...	0.0	[6..398]	[3..396]
gi\|227245803, gi... - gi\|227557893\|ref\|ZP_03987940.1\| malate dehydrogenase (oxaloacetate-decarboxylating) [Staphylococcus ... gi\|227851757, gi... - gi\|227899797\|ref\|ZP_04017602.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus TCH60], gi... gi\|251801801, gi... - gi\|251814692\|ref\|ZP_04829165.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus TCH70], gi... gi\|253315125 - gi\|253315125\|ref\|ZP_04838338.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aure... gi\|253732352, gi... - gi\|253732352\|ref\|ZP_04866517.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus USA300_TCH... gi\|253734515, gi... - gi\|253734515\|ref\|ZP_04868680.1\| malate dehydrogenase (oxaloacetate-decarboxylating) [Staphylococcus ... gi\|255006486 - gi\|255006486\|ref\|ZP_05145087.2\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aure... gi\|82751289, gi\|... - gi\|82751289\|ref\|YP_417030.1\| NAD-dependent malic enzyme [Staphylococcus aureus RF122], gi\|82656820\|e... gi\|150394248, gi... - gi\|90583539\|ref\|ZP_01239294.1\| Malate dehydrogenase (oxaloacetate decarboxylating) [Staphylococcus a... gi\|90430847, gi\|... - gi\|90585460\|ref\|ZP_01241169.1\| Malic enzyme, N-terminal:Malic enzyme, NAD-binding [Staphylococcus au... gi\|25283685 - pir\|\|B89954 hypothetical protein SA1524 [imported] - Staphylococcus aureus (strain N315) gi\|21283374, gi\|... - gi\|21283374\|ref\|NP_646462.1\| hypothetical protein MW1645 [Staphylococcus aureus subsp. aureus MW2], ... gi\|156722154, gi... - gi\|156980019\|ref\|YP_001442278.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aur... gi\|269203339\|ref... - NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aureus ED98] gi\|14247474, gi\|... - gi\|15924692\|ref\|NP_372226.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus ... gi\|13701497, gi\|... - gi\|15927279\|ref\|NP_374812.1\| hypothetical protein SA1524 [Staphylococcus aureus subsp. aureus N315],... gi\|49242072, gi\|... - gi\|49483943\|ref\|YP_041167.1\| NAD-dependent malic enzyme [Staphylococcus aureus subsp. aureus MRSA252... gi\|49486527, gi\|... - gi\|49486527\|ref\|YP_043748.1\| NAD-dependent malic enzyme [Staphylococcus aureus subsp. aureus MSSA476...	0.0	[6..398]	[3..396]
gi\|163938503, gi... - gi\|89205994\|ref\|ZP_01184558.1\| Malate dehydrogenase (oxaloacetate decarboxylating) [Bacillus weihens...	0.0	[1..399]	[1..399]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLANQINERS LLLHKELVGK IEITSKVEVN SADDLSLTYT PGVAESCKAI AADEETVYDY  60
   61 TARGNMVAVV SDGTAVLGLG NIGPKAAMPV MEGKSILFKK FANVDAFPLC LGTTDVDEIV 120
  121 TLVKNLEPTF AGINLEDIAA PRCFEIEKRL KEETNIPVFH DDQHGTAIVV LAAVINALKV 180
  181 VSKQMDHVKI VINGAGSAGI AIGKLLLKAG AQHITLVSLE GIVCEGEAWM NEAQIEVSKK 240
  241 TNREHVRGTL KEAIHQADIF IGVSAPNVLT KELVQMMNEK AIVFAMANPI PEIFPEDALE 300
  301 AGAAVVGTGR SDYANQVNNV LAFPGIFRGA LDVRATDITE EMKLAAAYGI ANIITDEERN 360
  361 ANYVIPNPLD KRVVPSVAEA VAKAAIDSGV AQIMKIPSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	2a9fA
Description:	Crystal structure of a putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating))
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits