YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260723, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260723, gi|....

Description	E-value	Query Range	Subject Range
gi\|118476254, gi... - gi\|118476254\|ref\|YP_893405.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein [Bacillus th... gi\|49481667, gi\|... - gi\|49481667\|ref\|YP_034825.1\| glycerol-3-phosphate ABC transporter ATP-binding protein [Bacillus thur...	0.0	[1..376]	[1..376]
gi\|51978212, gi\|... - gi\|52144743\|ref\|YP_082086.1\| glycerol-3-phosphate ABC transporter ATP-binding protein [Bacillus cere...	0.0	[1..376]	[1..376]
gi\|42779708, gi\|... - gi\|42779708\|ref\|NP_976955.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative [Ba...	0.0	[1..376]	[1..376]
gi\|75759469, gi\|... - gi\|75759469\|ref\|ZP_00739561.1\| SN-glycerol-3-phosphate transport ATP-binding protein ugpC [Bacillus ...	0.0	[1..376]	[1..376]
gi\|89206007, gi\|... - gi\|89206007\|ref\|ZP_01184571.1\| ABC transporter related [Bacillus weihenstephanensis KBAB4], gi\|89156...	0.0	[12..376]	[1..365]
gi\|172081150, gi... - gi\|177653758\|ref\|ZP_02935859.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|190560660, gi... - gi\|190568168\|ref\|ZP_03021077.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|65317989, gi\|... - gi\|65317989\|ref\|ZP_00390948.1\| COG3839: ABC-type sugar transport systems, ATPase components [Bacillu... gi\|165871776, gi... - gi\|165871776\|ref\|ZP_02216420.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|167635682, gi... - gi\|167635682\|ref\|ZP_02393993.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|167511348, gi... - gi\|167640633\|ref\|ZP_02398894.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|170667536, gi... - gi\|170688511\|ref\|ZP_02879718.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|227816563, gi... - gi\|227816563\|ref\|YP_002816572.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein ... gi\|170126862, gi... - gi\|170708206\|ref\|ZP_02898652.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein [... gi\|229599917, gi... - gi\|229599917\|ref\|YP_002865168.1\| putative glycerol-3-phosphate ABC transporter, ATP-binding protein ... gi\|254684356 - gi\|254684356\|ref\|ZP_05148216.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ... gi\|254722158 - gi\|254722158\|ref\|ZP_05183947.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ... gi\|254738820 - gi\|254738820\|ref\|ZP_05196523.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ... gi\|254743795 - gi\|254743795\|ref\|ZP_05201479.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ... gi\|254755044 - gi\|254755044\|ref\|ZP_05207078.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ... gi\|254762222 - gi\|254762222\|ref\|ZP_05214066.1\| glycerol-3-phosphate ABC transporter, ATP-binding protein, putative ...	0.0	[12..376]	[1..365]
gi\|30018753, gi\|... - gi\|30018753\|ref\|NP_830384.1\| SN-glycerol-3-phosphate transport ATP-binding protein ugpC [Bacillus ce...	3.0E-99	[12..376]	[1..365]
gi\|89097784, gi\|... - gi\|89097784\|ref\|ZP_01170672.1\| MsmX [Bacillus sp. NRRL B-14911], gi\|89087643\|gb\|EAR66756.1\| MsmX [Ba...	4.0E-97	[13..364]	[4..365]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	4.0E-96	[11..366]	[2..360]
gi\|18976488, gi\|... - gi\|18976488\|ref\|NP_577845.1\| putative multiple sugar transport protein [Pyrococcus furiosus DSM 3638...	4.0E-96	[13..369]	[4..363]

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Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTRRKKECN LVIELKNVSK VYQNAEETAV KGVSVHIKKG EFFVLVGPSG CGKSTLLRMI  60
   61 AGLEEISSGD LIINERVAND LEPKDRNLSM VFQNYALYPH LSVEENILFG LKVRKVQKEE 120
  121 RQKRLMEAVE MVGLKEYVKM KPGQLSGGQR QRVALARAIV SQAPICLMDE PLSNLDAKLR 180
  181 AQMRIEIREI QQRLGITMIY VTHDQIEAMT MGDRIMVLNK GSVQQVGTPL DIYNKPANEF 240
  241 VASFIGSPSM NMNDGEVDEE KGVLHIGQLQ IPLSIGQLKQ LPAGTVRVGM RPEHIALSEE 300
  301 GQEVTLQSVE VLGNESILNF VINGTTWSAK VIGQLLLNKG DKVKLLFSEE KLCFFHQNTN 360
  361 ERLKVVAEEE LKVVAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.154902
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits