YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254086, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254086, gi|....

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	1.0E-55	[7..434]	[950..1385]
gi\|125985927\|ref... - GA11811-PA [Drosophila pseudoobscura], GA11811 [Drosophila pseudoobscura pseudoobscura] gi\|125985927, gi... - gi\|54645052\|gb\|EAL33792.1\| GA11811 [Drosophila pseudoobscura pseudoobscura], gi\|125985927\|ref\|XP_001...	3.0E-55	[3..428]	[356..852]
gi\|157117432, gi... - gi\|157117432\|ref\|XP_001658764.1\| tyrosine transporter [Aedes aegypti], gi\|108876049\|gb\|EAT40274.1\| t...	3.0E-55	[3..432]	[328..827]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	1.0E-54	[7..395]	[517..907]
gi\|76662861 - gi\|76662861\|ref\|XP_602611.2\| PREDICTED: similar to P protein [Bos taurus]	3.0E-54	[2..433]	[539..1044]
gi\|116117870, gi... - gi\|118792003\|ref\|XP_320080.2\| ENSANGP00000012276 [Anopheles gambiae str. PEST], gi\|116117870\|gb\|EAA1...	1.0E-53	[3..432]	[293..793]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	2.0E-53	[7..429]	[581..1009]
hoe1-PC, FBpp0311695 - The gene hoepel1 is referred to in FlyBase by the symbol Dmel\hoe1 (CG12787, FBgn0041150). It is a p...	8.0E-53	[3..428]	[342..838]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	1.0E-52	[3..428]	[591..1036]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALLGFAMV FVFMFLIMKK RMSALVALIL IPITFALIGG FYADMGPMML EGIQKLAPTG  60
   61 IMLMFAILYF GIMIDSGLFD PVISRILKFV KGDPLKIVVG TAILTIIVSL DGDGTTTYMI 120
  121 TVSAMYPLYK RLGMNPLILA GVVMLGAGVT NLTPWGGPTA RVMSALGLDA SELFTPLIPG 180
  181 MIAGALWVVF VAYYLGKKER KRLGIMDV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [209-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYLKQMQTTD EQAATVEAAV HKRPKLLWIN FLLTATLLVC LILEVMPLPV LFTIAFAIAV  60
   61 MLNYPNLEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [278-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKERIASHAG NVLAVVSLVF AAGIFTGILS GTKMVDAMAK SVVTLIPDAL GPQLPIITAL  60
   61 LSMPFTFFMS NDAFYFGVLP ILTKAAATYG ISAAEMGRAS LLRQPVHLLS PLVASTYLLV 120
  121 GMAKVDFGEH QRFTLLWAVG TTMVMLITGI LIGVIPI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits