YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177475, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177475, gi|....

Description	E-value	Query Range	Subject Range
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	0.0	[5..509]	[12..508]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	0.0	[5..506]	[12..505]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	0.0	[5..506]	[12..505]
gi\|1524397\|gb\|AA... - glycine betaine transporter OpuD OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) GN=opuD PE=1 SV=1 OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis GN=opuD PE=3 SV=1	0.0	[1..515]	[1..508]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[5..506]	[12..505]
gi\|133732292, gi... - gi\|254936976\|ref\|ZP_05268673.1\| glycine betaine transporter BetL [Listeria monocytogenes F6900], gi\|... gi\|126943862, gi... - gi\|254899210\|ref\|ZP_05259134.1\| glycine betaine transporter BetL [Listeria monocytogenes J0161], gi\|... gi\|254912649 - gi\|254912649\|ref\|ZP_05262661.1\| glycine betaine transporter BetL [Listeria monocytogenes J2818] gi\|47015805, gi\|... - gi\|47095801\|ref\|ZP_00233406.1\| glycine betaine transporter [Listeria monocytogenes str. 1/2a F6854],...	0.0	[2..514]	[1..504]
gi\|153175354, gi... - gi\|254827020\|ref\|ZP_05231707.1\| glycine betaine transporter BetL [Listeria monocytogenes FSL N3-165]... gi\|153196599, gi... - gi\|254831667\|ref\|ZP_05236322.1\| glycine betaine transporter BetL [Listeria monocytogenes 10403S], gi... gi\|16804131 - gi\|16804131\|ref\|NP_465616.1\| glycine betaine transporter BetL [Listeria monocytogenes EGD-e] gi\|224501110 - gi\|224501110\|ref\|ZP_03669417.1\| glycine betaine transporter BetL [Listeria monocytogenes FSL R2-561] BETL_LISMN - Glycine betaine transporter BetL OS=Listeria monocytogenes GN=betL PE=1 SV=1	0.0	[2..514]	[1..504]
gi\|91201825 - gi\|91201825\|emb\|CAJ74885.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	0.0	[1..499]	[10..502]
gi\|254879728 - gi\|254879728\|ref\|ZP_05252438.1\| glycine betaine transporter [Listeria monocytogenes FSL J2-071] gi\|254826264 - gi\|254826264\|ref\|ZP_05231265.1\| glycine betaine transporter [Listeria monocytogenes FSL J1-194] gi\|153167969, gi... - gi\|153167969\|ref\|ZP_01928021.1\| glycine betaine transporter [Listeria monocytogenes FSL N1-017], gi\|... gi\|255520758 - gi\|255520758\|ref\|ZP_05387995.1\| glycine betaine transporter [Listeria monocytogenes FSL J1-175] gi\|46908327, gi\|... - gi\|46908327\|ref\|YP_014716.1\| glycine betaine transporter [Listeria monocytogenes str. 4b F2365], gi\|... gi\|153203195, gi... - gi\|254931799\|ref\|ZP_05265158.1\| glycine betaine transporter [Listeria monocytogenes HPB2262], gi\|153...	0.0	[2..514]	[1..504]
gi\|48729140, gi\|... - gi\|77456475\|ref\|YP_345980.1\| BCCT transporter [Pseudomonas fluorescens Pf0-1], gi\|77380478\|gb\|ABA719...	0.0	[1..503]	[11..509]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKENSVFY ISILLTTLFI IWGITPASWI QGYDLQSVTS SLNSFILNKF GWFYSLLMTA  60
   61 MIILATYLAF SKYGSIRLGK DGEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKYSYPSWLS MLFGAGMGIG LLFYGIAEPI SHFTDPLTGK AGTEESAKLA MQYSFFHWGL  60
   61 FPWALYAMVA LTIAYFTFRK QKGSTIGATV TPLFNRSKNS PIGKTVDILA VLATVFGIVP 120
  121 SVGIGAQQIA GGLSYLFPSI HNTLLTQLVL IAIFAVLYLT SAQTGLDRGI KYLSNLNFSL 180
  181 TGILLVSFLL LGPTVFIMKY FTSTLGSYIG ALPSMGLNLG AFNEKSSSWI ENWTIFYWGW 240
  241 W

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [326-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISWSPFVGTF IARISKGRTI KEFIFGVVLV PTLICTFWFA VFGGTAIHME MFQSLGVADE  60
   61 IAKNGTEIGL FAVISHLPFS TFLTIIGLIL VATFFVTSAD SATFVVSMQT SNGSLSPKNS 120
  121 LKLIWGLTIA IIAAILLQAG GLNALQIAAI IAALPFSIVV VLMVTSLFKE LRKEDINSQT 180
  181 KEVPKKIKKV M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits