YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253929, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253929, gi|....

Description	E-value	Query Range	Subject Range
gi\|42735504, gi\|... - gi\|42779588\|ref\|NP_976835.1\| type I phosphodiesterase/nucleotide pyrophosphatase family protein [Bac...	3.0E-65	[1..437]	[1..437]
gi\|47567219, gi\|... - gi\|47567219\|ref\|ZP_00237933.1\| phosphodiesterase I [Bacillus cereus G9241], gi\|47556062\|gb\|EAL14399....	4.0E-65	[1..437]	[1..437]
gi\|51978321, gi\|... - gi\|52144852\|ref\|YP_081977.1\| type I phosphodiesterase [Bacillus cereus E33L], gi\|51978321\|gb\|AAU1987...	9.0E-65	[1..437]	[1..437]
gi\|30018645, gi\|... - gi\|30018645\|ref\|NP_830276.1\| phosphoglyceromutase/phosphopentomutase [Bacillus cereus ATCC 14579], g...	1.0E-64	[1..437]	[1..437]
gi\|225862435, gi... - gi\|225862435\|ref\|YP_002747813.1\| type I phosphodiesterase/nucleotide pyrophosphatase family protein ... gi\|49476811, gi\|... - gi\|49476811\|ref\|YP_034721.1\| type I phosphodiesterase [Bacillus thuringiensis serovar konkukian str.... gi\|229182779, gi... - gi\|229182779\|ref\|ZP_04310019.1\| type I phosphodiesterase [Bacillus cereus BGSC 6E1], gi\|228600752\|gb... gi\|228913141, gi... - gi\|228913141\|ref\|ZP_04076780.1\| type I phosphodiesterase [Bacillus thuringiensis serovar pulsiensis ... gi\|118476148, gi... - gi\|118476148\|ref\|YP_893299.1\| type I phosphodiesterase/nucleotide pyrophosphatase family protein [Ba...	2.0E-64	[1..437]	[1..437]
gi\|75761524, gi\|... - gi\|75761524\|ref\|ZP_00741484.1\| Phosphoglyceromutase/phosphopentomutase [Bacillus thuringiensis serov... gi\|228860553, gi... - gi\|228899112\|ref\|ZP_04063384.1\| type I phosphodiesterase [Bacillus thuringiensis IBL 4222], gi\|22886...	5.0E-64	[1..437]	[1..437]
gi\|89151917, gi\|... - gi\|89199981\|ref\|ZP_01178737.1\| Type I phosphodiesterase/nucleotide pyrophosphatase [Bacillus cereus ...	6.0E-64	[8..437]	[8..437]
gi\|163938384, gi... - gi\|89204708\|ref\|ZP_01183284.1\| Type I phosphodiesterase/nucleotide pyrophosphatase [Bacillus weihens...	5.0E-62	[1..437]	[1..437]
gi\|16413930, gi\|... - pir\|\|AH1614 weakly pyrophosphatase homolog lin1457 [imported] - Listeria innocua (strain Clip11262),... gi\|16800525 - gi\|16800525\|ref\|NP_470793.1\| hypothetical protein lin1457 [Listeria innocua Clip11262]	2.0E-58	[5..436]	[1..422]
gi\|25499668 - pir\|\|F96958 aP superfamily [imported] - Clostridium acetobutylicum gi\|15893768, gi\|... - gi\|15893768\|ref\|NP_347117.1\| AP endonuclease [Clostridium acetobutylicum ATCC 824], gi\|15023336\|gb\|A...	5.0E-58	[3..435]	[2..433]

Back

Predicted Domain #1

Region A:
Residues: [1-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKALTNRVI ILSFDCLSAL DFPILQKLPH FQSLIKKGTV VEKVEPIYPS VTYPSHSTIV  60
   61 TGNYPNKHGV VSNTLLQPGR ESPDWHWYRK SIKGTTLYDE AHKANLTTAA LLWPVTGRAN 120
  121 IDYNLPEIFP NRPWQNQVLV SLFSGSPLYQ LDLNRRFGHI RNGLSQPELD DFVLASAVHT 180
  181 IQTKKPNVMF VHFTDLDTQR HYHGFESKET IAAIHRHDER LGQIIQALKD SDLYEESTII 240
  241 ALGDHSALSE NKAIQLNVLF HQKGLISVNS KGNLVDWKVY CQSCDGSAYV YVKDKNDTDT 300
  301 IREVQLLLEE LLQHKQNGIE FILHDEDAKE CGADGNCLFM LEAREGYYFT ENYTGDFIKE 360
  361 ITEKDVTPSK KYTFGTHGYS PTKPNYETIF IAAGKGIKSG VTIPYMRLID ESPTIARLLG 420
  421 LHLGETDGSI VEDLLQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	1hdhA
Description:	Arylsulfatase B (4-sulfatase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.68372961800329	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	2.66171497998099	bayes_pls_golite062009
hydrolase activity	1.50712564257206	bayes_pls_golite062009
phosphatase activity	1.16281143919901	bayes_pls_golite062009
phosphoric ester hydrolase activity	1.00833978001504	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: