YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260254, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260254, gi|....

Description	E-value	Query Range	Subject Range
TILS_BACCZ - tRNA(Ile)-lysidine synthase OS=Bacillus cereus (strain ZK / E33L) GN=tilS PE=3 SV=1	0.0	[1..476]	[1..476]
gi\|195991035, gi... - gi\|196036405\|ref\|ZP_03103802.1\| tRNA(Ile)-lysidine synthetase [Bacillus cereus W], gi\|195991035\|gb\|E... gi\|225862116, gi... - gi\|225862116\|ref\|YP_002747494.1\| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102], gi\|2257909... TILS_BACHK - tRNA(Ile)-lysidine synthase OS=Bacillus thuringiensis subsp. konkukian GN=tilS PE=3 SV=1 gi\|196047393, gi... - gi\|196047393\|ref\|ZP_03114606.1\| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108], gi\|19602179... gi\|196027396, gi... - gi\|196041776\|ref\|ZP_03109066.1\| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99], gi\|19602... TILS_BACHK - tRNA(Ile)-lysidine synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=tilS PE=3 S... gi\|218539357, gi... - gi\|218901265\|ref\|YP_002449099.1\| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820], gi\|218539357...	0.0	[1..476]	[1..476]
gi\|47570187, gi\|... - gi\|47570187\|ref\|ZP_00240841.1\| cell cycle protein mesJ [Bacillus cereus G9241], gi\|47553131\|gb\|EAL11...	0.0	[1..476]	[1..476]
TILS_BACC1 - tRNA(Ile)-lysidine synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=tilS PE=3 SV=1	0.0	[1..476]	[1..476]
gi\|65317524 - gi\|65317524\|ref\|ZP_00390483.1\| COG0037: Predicted ATPase of the PP-loop superfamily implicated in ce...	0.0	[1..476]	[5..480]
TILS_BACCR - tRNA(Ile)-lysidine synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 /...	0.0	[1..476]	[1..476]
gi\|228853800, gi... - gi\|228905860\|ref\|ZP_04069758.1\| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200], gi\|228... gi\|74490730, gi\|... - gi\|75761780\|ref\|ZP_00741716.1\| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar is... gi\|228860842, gi... - gi\|228898817\|ref\|ZP_04063100.1\| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222], gi\|22... gi\|228796549, gi... - gi\|228963164\|ref\|ZP_04124334.1\| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto st...	0.0	[1..476]	[5..480]
gi\|89207184, gi\|... - gi\|89207184\|ref\|ZP_01185730.1\| PP-loop [Bacillus weihenstephanensis KBAB4], gi\|89154864\|gb\|EAR74887....	0.0	[1..476]	[1..476]
gi\|89202217, gi\|... - gi\|89202217\|ref\|ZP_01180945.1\| PP-loop [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89149734\|gb...	4.0E-98	[1..476]	[1..476]
gi\|2127047, gi\|4... - gi\|467456\|dbj\|BAA05302.1\| unknown [Bacillus subtilis], pir\|\|S66097 cell-cycle protein homolog yacA -... gi\|467456\|dbj\|BA... - unknown [Bacillus subtilis]	2.0E-84	[3..466]	[12..479]

Back

Predicted Domain #1

Region A:
Residues: [1-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDTFVEKVD DFVRQHDVLK ERSTIVVGVS GGPDSLALLY YLLEKRAAKQ FEIVVAHVDH  60
   61 MFRGDESHED LQFVQDLCKG LGVICETIRI NVSQYQKQYG MNAQVAAREC RYAFLERIMK 120
  121 KYDARYVALG HHGDDQVETI LMRLVRGSTP KGYAGIAVKR PFHNGYLIRP LLGVTKEEIV 180
  181 NYCNELKIIP RIDPSNKKEV YTRNRLRKYV LPHLKEENPQ VHEKFQKFSM QMQEDEAYLQ 240
  241 ELAFEKMNKV ITKKSDKQIS LSIPTFESMS MPLQRRGIQL ILNYLYEYKI PSSLSSIHID 300
  301 KVIEFFKRTQ PSGSLDFPGD LKIVRAYEEC SFGFKQEIVS PFLQDLSVPG TITLSNGDKL 360
  361 VTEVSEDIPS DMNETVFVAK YNDISYPIRI RSRENGDRMS IQGMNGTKKI KAIFIEAKVP 420
  421 REKREEWPVV CDASGNIIWL PLLKRSAFAI SKETAKKDKY MIIHYKSKES SGRIMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	1ni5A
Description:	Putative cell cycle protein MesJ, N-terminal domain; Putative cell cycle protein MesJ, middle and C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	4.60287192384586	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	4.60287192384586	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	4.60176205513184	bayes_pls_golite062009
phenylalanine-tRNA ligase activity	3.92950430408357	bayes_pls_golite062009
ligase activity	3.1231826863016	bayes_pls_golite062009
catalytic activity	0.828867994386867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: