YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253518, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253518, gi|....

Description	E-value	Query Range	Subject Range
gi\|192957464, gi... - gi\|75236425\|ref\|ZP_00720521.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri...	0.0	[1..378]	[1..366]
gi\|209161837, gi... - gi\|209400437\|ref\|YP_002273227.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|209921178, gi... - gi\|209921178\|ref\|YP_002295262.1\| DNA polymerase III subunit beta [Escherichia coli SE11], gi\|2099144... gi\|217320369, gi... - gi\|217324148\|ref\|ZP_03440232.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14... gi\|218358773, gi... - gi\|218551231\|ref\|YP_002385023.1\| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469]... gi\|218363035, gi... - gi\|218556266\|ref\|YP_002389180.1\| DNA polymerase III subunit beta [Escherichia coli IAI1], gi\|2183630... gi\|218367545, gi... - gi\|218560776\|ref\|YP_002393689.1\| DNA polymerase III subunit beta [Escherichia coli S88], gi\|21836754... gi\|218429553, gi... - gi\|218691989\|ref\|YP_002400201.1\| DNA polymerase III subunit beta [Escherichia coli ED1a], gi\|2184295... gi\|218697423, gi... - gi\|218697423\|ref\|YP_002405090.1\| DNA polymerase III subunit beta [Escherichia coli 55989], gi\|218354... gi\|81247446, gi\|... - gi\|82546035\|ref\|YP_409982.1\| DNA polymerase III subunit beta [Shigella boydii Sb227], gi\|81247446\|gb... gi\|189378717, gi... - gi\|189378717\|gb\|EDU97133.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC508], ... gi\|89110312, gi\|... - gi\|89110312\|ref\|AP_004092.1\| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. W3... gi\|170018063, gi... - gi\|170018063\|ref\|YP_001723017.1\| DNA polymerase III subunit beta [Escherichia coli ATCC 8739], gi\|16... gi\|73857492, gi\|... - gi\|74314015\|ref\|YP_312434.1\| DNA polymerase III subunit beta [Shigella sonnei Ss046], gi\|73857492\|gb... gi\|169891038, gi... - gi\|170083203\|ref\|YP_001732523.1\| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr... gi\|82779230, gi\|... - gi\|82779230\|ref\|YP_405579.1\| DNA polymerase III subunit beta [Shigella dysenteriae Sd197], gi\|812433... gi\|170520206, gi... - gi\|170682488\|ref\|YP_001746029.1\| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5], gi\|170... gi\|195936322 - gi\|195936322\|ref\|ZP_03081704.1\| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. EC402... gi\|208807282, gi... - gi\|208807282\|ref\|ZP_03249619.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC42... gi\|208813217, gi... - gi\|208813217\|ref\|ZP_03254546.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC40... gi\|208740619, gi... - gi\|208820496\|ref\|ZP_03260816.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC40... gi\|75197599, gi\|... - gi\|75197599\|ref\|ZP_00707669.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|75210687, gi\|... - gi\|75210687\|ref\|ZP_00710828.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|187730327, gi... - gi\|75177730\|ref\|ZP_00697795.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Shigell... gi\|157156673, gi... - gi\|75188458\|ref\|ZP_00701725.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|193063787, gi... - gi\|75258241\|ref\|ZP_00729689.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|188487741, gi... - gi\|75514236\|ref\|ZP_00736544.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|190904132, gi... - gi\|75231028\|ref\|ZP_00717463.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|191170441, gi... - gi\|75242509\|ref\|ZP_00726253.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|218702550, gi... - gi\|218702550\|ref\|YP_002410179.1\| DNA polymerase III subunit beta [Escherichia coli IAI39], gi\|218372... gi\|218707347, gi... - gi\|218707347\|ref\|YP_002414866.1\| DNA polymerase III subunit beta [Escherichia coli UMN026], gi\|21843... gi\|194420778, gi... - gi\|83571500\|ref\|ZP_00922940.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Shigell... gi\|194425455, gi... - gi\|83588433\|ref\|ZP_00927057.1\| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escheri... gi\|188016968, gi... - gi\|188016968\|gb\|EDU55090.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4113],... gi\|189359039, gi... - gi\|189359039\|gb\|EDU77458.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4401],... gi\|189369478, gi... - gi\|189369478\|gb\|EDU87894.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4501],... gi\|189364639, gi... - gi\|189364639\|gb\|EDU83058.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4486],... gi\|187771361, gi... - gi\|187771361\|gb\|EDU35205.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4196],... gi\|189002623, gi... - gi\|189002623\|gb\|EDU71609.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4076],... EG10242 - DNA polymerase III, beta subunit / DNA polymerase III sliding clamp beta subunit; required for high ... gi\|226902765, gi... - gi\|237703501\|ref\|ZP_04533982.1\| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|238902791, gi... - gi\|238902791\|ref\|YP_002928587.1\| DNA polymerase III, beta subunit [Escherichia coli BW2952], gi\|2388... gi\|251786967, gi... - gi\|251786967\|ref\|YP_003001271.1\| hypothetical protein B21_03528 [Escherichia coli BL21], gi\|24237924... DPO3B_ECOL6 - DNA polymerase III subunit beta OS=Escherichia coli O6 GN=dnaN PE=3 SV=1 gi\|254290402, gi... - gi\|254290402\|ref\|YP_003056150.1\| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)], gi\|25... gi\|226838883, gi... - gi\|254038918\|ref\|ZP_04872970.1\| DNA polymerase III [Escherichia sp. 1_1_43], gi\|226838883\|gb\|EEH7091... gi\|254163652, gi... - gi\|254163652\|ref\|YP_003046760.1\| DNA polymerase III subunit beta [Escherichia coli B str. REL606], g... gi\|254595104, gi... - gi\|254795704\|ref\|YP_003080541.1\| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW1... gi\|91213223, gi\|... - gi\|91213223\|ref\|YP_543209.1\| DNA polymerase III subunit beta [Escherichia coli UTI89], gi\|91074797\|g... DPO3B_ECOL6 - DNA polymerase III subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dn... gi\|13364111, gi\|... - gi\|15833890\|ref\|NP_312663.1\| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. Sakai], ... DPO3B_ECOLI, DP3... - DNA polymerase III subunit beta (EC 2.7.7.7) - Escherichia coli, (P00583) DNA polymerase III, beta c... DPO3B_ECO57 - DNA polymerase III subunit beta OS=Escherichia coli O157:H7 GN=dnaN PE=3 SV=1 EG10242 - DNA polymerase III, beta subunit / DNA polymerase III sliding clamp beta subunit; required for high ... gi\|12518540, gi\|... - gi\|15804295\|ref\|NP_290334.1\| DNA polymerase III subunit beta [Escherichia coli O157:H7 EDL933], gi\|1... gi\|110644044, gi... - gi\|110644044\|ref\|YP_671774.1\| DNA polymerase III subunit beta [Escherichia coli 536], gi\|110345636\|g... gi\|115515101, gi... - gi\|117625977\|ref\|YP_859300.1\| DNA polymerase III subunit beta [Escherichia coli APEC O1], gi\|1155151... gi\|124500187, gi... - gi\|124529048\|ref\|ZP_01700194.1\| DNA polymerase III, beta subunit [Escherichia coli B], gi\|124500187\|... gi\|227839200, gi... - gi\|227883922\|ref\|ZP_04001727.1\| DNA-directed DNA polymerase [Escherichia coli 83972], gi\|227839200\|g...	0.0	[1..378]	[1..366]
gi\|229159051, gi... - gi\|229159051\|ref\|ZP_04287107.1\| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342], gi\|2286... gi\|228988719, gi... - gi\|228988719\|ref\|ZP_04148804.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar toch... gi\|52145207, gi\|... - gi\|52145207\|ref\|YP_081621.1\| DNA polymerase III subunit beta [Bacillus cereus E33L], gi\|51978676\|gb\|...	0.0	[1..379]	[1..379]
gi\|118415005, gi... - gi\|118475780\|ref\|YP_892931.1\| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al Hakam]... gi\|49476685, gi\|... - gi\|49476685\|ref\|YP_034362.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar konkuki... gi\|218901208, gi... - gi\|218901208\|ref\|YP_002449042.1\| DNA polymerase III, beta subunit [Bacillus cereus AH820], gi\|218537... gi\|196045398, gi... - gi\|196045398\|ref\|ZP_03112629.1\| DNA polymerase III, beta subunit [Bacillus cereus 03BB108], gi\|19602... gi\|228810495, gi... - gi\|228949212\|ref\|ZP_04111480.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar mont... gi\|196041972, gi... - gi\|196041972\|ref\|ZP_03109259.1\| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99], gi\|19... gi\|228828151, gi... - gi\|228931508\|ref\|ZP_04094418.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar anda... gi\|196036084, gi... - gi\|196036084\|ref\|ZP_03103484.1\| DNA polymerase III, beta subunit [Bacillus cereus W], gi\|195991251\|g... gi\|228930496, gi... - gi\|228930496\|ref\|ZP_04093496.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pond... gi\|228841582, gi... - gi\|228918102\|ref\|ZP_04081630.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar puls... gi\|254724148 - gi\|254724148\|ref\|ZP_05185933.1\| DNA polymerase III subunit beta [Bacillus anthracis str. A1055] gi\|229187719, gi... - gi\|229187719\|ref\|ZP_04314855.1\| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1], gi\|22859... gi\|229124993, gi... - gi\|229124993\|ref\|ZP_04254167.1\| DNA polymerase III subunit beta [Bacillus cereus 95/8201], gi\|228658... gi\|228688848, gi... - gi\|229094601\|ref\|ZP_04225668.1\| DNA polymerase III subunit beta [Bacillus cereus Rock3-42], gi\|22868...	0.0	[1..379]	[1..379]
gi\|30065009, gi\|... - gi\|30065009\|ref\|NP_839180.1\| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T], gi\|3... gi\|56480410, gi\|... - gi\|56480410\|ref\|NP_709499.2\| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301], gi\|563... gi\|110807609, gi... - gi\|110807609\|ref\|YP_691129.1\| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401], gi\|11...	0.0	[1..378]	[1..366]
gi\|42779083, gi\|... - gi\|42779083\|ref\|NP_976330.1\| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987], gi\|427349...	0.0	[1..379]	[1..379]
gi\|168464832, gi... - gi\|195632425\|gb\|EDX50909.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... gi\|238913090 - gi\|238913090\|ref\|ZP_04656927.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica... gi\|205344390, gi... - gi\|205344390\|gb\|EDZ31154.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... gi\|194457777, gi... - gi\|194471413\|ref\|ZP_03077397.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteric... gi\|197251713, gi... - gi\|197251713\|ref\|YP_002148775.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteri... gi\|161616955, gi... - gi\|161616955\|ref\|YP_001590920.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric... gi\|167548873, gi... - gi\|205325570\|gb\|EDZ13409.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... gi\|205332539, gi... - gi\|205332539\|gb\|EDZ19303.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... gi\|168260378, gi... - gi\|205350419\|gb\|EDZ37050.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... gi\|160866979, gi... - gi\|161505632\|ref\|YP_001572744.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. arizona... gi\|224470164, gi... - gi\|224585636\|ref\|YP_002639435.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric... gi\|16504793, gi\|... - gi\|25288590\|pir\|\|AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica subsp. enteri... gi\|206710866, gi... - gi\|207859063\|ref\|YP_002245714.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric... gi\|29143976, gi\|... - gi\|29143976\|ref\|NP_807318.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica se... gi\|213648785 - gi\|213648785\|ref\|ZP_03378838.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica... gi\|213865135 - gi\|213865135\|ref\|ZP_03387254.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica... gi\|214001465 - gi\|214001465\|ref\|ZP_03412200.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica... gi\|62129958, gi\|... - gi\|62182325\|ref\|YP_218742.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica se... gi\|197364638, gi... - gi\|197364638\|ref\|YP_002144275.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric... gi\|56415710, gi\|... - gi\|56415710\|ref\|YP_152785.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica se... gi\|198245644, gi... - gi\|198245644\|ref\|YP_002217787.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteri... gi\|16762488 - gi\|16762488\|ref\|NP_458105.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica se... gi\|204928586, gi... - gi\|204928586\|ref\|ZP_03219785.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteric... gi\|205274357, gi... - gi\|205354576\|ref\|YP_002228377.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric...	0.0	[1..378]	[1..366]
gi\|200387477, gi... - gi\|200387477\|ref\|ZP_03214089.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteric... gi\|194449346, gi... - gi\|194449346\|ref\|YP_002047870.1\| DNA polymerase III subunit beta [Salmonella enterica subsp. enteric... DPO3B_SALTY - DNA polymerase III subunit beta OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=d... gi\|194444384, gi... - gi\|194444384\|ref\|YP_002043087.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enteri... gi\|205338833, gi... - gi\|205338833\|gb\|EDZ25597.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=dnaN] [protein=DNA polymerase III subunit beta] [protein_id=YP_005240104.1] [location=compleme... DPO3B_SALTY, DP3... - DNA polymerase III subunit beta OS=Salmonella typhimurium GN=dnaN PE=3 SV=3, (P26464) DNA polymerase... DPO3B_SALTY - DNA polymerase III subunit beta OS=Salmonella typhimurium GN=dnaN PE=3 SV=3 gi\|167992431, gi... - gi\|205329442\|gb\|EDZ16206.1\| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica se...	0.0	[1..378]	[1..366]
gi\|29893820, gi\|... - gi\|30018280\|ref\|NP_829911.1\| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579], gi\|298938... gi\|229130736, gi... - gi\|229130736\|ref\|ZP_04259689.1\| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228777557, gi... - gi\|228982205\|ref\|ZP_04142494.1\| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407], gi\|2... gi\|228784179, gi... - gi\|228975569\|ref\|ZP_04136121.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar thur... gi\|228942639, gi... - gi\|228942639\|ref\|ZP_04105171.1\| DNA polymerase III subunit beta [Bacillus thuringiensis serovar berl...	0.0	[1..379]	[1..381]
gi\|163938015, gi... - gi\|89208017\|ref\|ZP_01186542.1\| DNA polymerase III, beta chain [Bacillus weihenstephanensis KBAB4], g... gi\|229136316, gi... - gi\|229136316\|ref\|ZP_04265063.1\| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196], gi\|228...	0.0	[1..379]	[1..381]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSIQKDYL VRSVQDVMKA VSFRTTIPIL TGIKVVATEE GVTLTGSDAD ISIESFIPVE  60
   61 EDGKEIVEVK QSGSIVLQAK YFSEIVKKLP KETVEISVEN HLMTKITSGK SEFNLNGLDS 120
  121 AEYPLLPQIE EHHVFKIPTD LLKHMIRQTV FAVSTSETRP ILTGVNWKVY NSELTCIATD 180
  181 SHRLALRKAK IEGIVDEFQA NVVIPGKSLN ELSKILDESE EMVDIVITEY QVLFRTKHLL 240
  241 FFSRLLEGNY PDTTRLIPAE SKTDIFVNTK EFLQAIDRAS LLARDGRNNV VKLSTLEQAM 300
  301 LEISSNSPEI GKVVEEVQCE KVDGEELKIS FSAKYMMDAL KALDSTEIKI SFTGAMRPFL 360
  361 IRTVNDESII QLILPVRTY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.522879
Match:	2awaA
Description:	Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits