YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998481, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998481, gi|....

Description	E-value	Query Range	Subject Range
gi\|118430852, gi... - gi\|118430852\|ref\|NP_146917.2\| ABC transporter, ATP binding protein [Aeropyrum pernix K1], gi\|1160621...	326.0	[0..1]	[256..1]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	325.0	[0..2]	[254..13]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	322.0	[0..1]	[254..1]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	322.0	[0..1]	[256..1]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	321.0	[0..1]	[256..1]
gi\|52784220, gi\|... - gi\|52784220\|ref\|YP_090049.1\| hypothetical protein BLi00398 [Bacillus licheniformis ATCC 14580], gi\|5...	321.0	[0..1]	[254..1]
gi\|5457621, gi\|1... - gi\|5457621\|emb\|CAB49112.1\| Sugar transport, ABC transporter ATP-binding protein [Pyrococcus abyssi G... gi\|5457621, gi\|7... - pir\|\|A75208 sugar transport ATP-binding protein. PAB2232 - Pyrococcus abyssi (strain Orsay), gi\|5457...	320.0	[0..1]	[256..1]
gi\|18312553, gi\|... - gi\|18312553\|ref\|NP_559220.1\| multiple sugar-binding transport ATP-binding [Pyrobaculum aerophilum st...	320.0	[0..1]	[256..1]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLKLDNVT IRFGGLVAVD SVNLTVEQGE ILALIGPNGA GKSTLFNLIT GIYTPTAGSI  60
   61 AFKGETISGR KTYRIAAAGI GRTFQNIRLF PELSVLENVL IGAHTRGKWD LTGSILKLAP 120
  121 WVRREEGELA EWAIECLKQV DLAHRAYEPS TSLPYGEQRR LEIARALAIK PDLILLDEPA 180
  181 AGMNPQEKQV LLEMVRKIRA TGITVFLVEH DMKFVMGLSD RIAVLDYGVK IAEGKPEEIR 240
  241 ANPQVIEAYL GKAAVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits