YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985318, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985318, gi|....

Description	E-value	Query Range	Subject Range
gi\|83857085, gi\|... - gi\|83857085\|ref\|ZP_00950613.1\| putative membrane protein [Croceibacter atlanticus HTCC2559], gi\|8384...	219.0	[0..4]	[270..746]
gi\|48845545, gi\|... - gi\|78224423\|ref\|YP_386170.1\| cytochrome c assembly protein [Geobacter metallireducens GS-15], gi\|781...	218.0	[0..1]	[270..1]
gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027... gi\|86143366, gi\|... - gi\|86143366\|ref\|ZP_01061768.1\| Cytochrome c assembly protein [Flavobacterium sp. MED217], gi\|8583027...	211.0	[0..5]	[270..779]
gi\|112803926, gi... - gi\|154175361\|ref\|YP_001408628.1\| outer membrane lipoprotein MapA [Campylobacter curvus 525.92], gi\|1...	211.0	[0..27]	[270..749]
gi\|57018869, gi\|... - gi\|57240528\|ref\|ZP_00368477.1\| cytochrome c biogenesis protein (ycf5) [Campylobacter lari RM2100], g...	211.0	[0..4]	[270..729]
gi\|91215719, gi\|... - gi\|91215719\|ref\|ZP_01252689.1\| Cytochrome c assembly protein [Psychroflexus torquis ATCC 700755], gi...	210.0	[0..3]	[270..803]
gi\|113198396 - gi\|113198396\|ref\|ZP_01409898.1\| hypothetical protein Cfetf_01000399 [Campylobacter fetus subsp. fetu...	209.0	[0..4]	[270..711]
gi\|57237900, gi\|... - gi\|57237900\|ref\|YP_179148.1\| CcmF/CcyK/CcsA family cytochrome c biogenesis protein [Campylobacter je...	208.0	[0..5]	[270..777]
gi\|87249128, gi\|... - gi\|87305824\|ref\|ZP_01087977.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|85843625, gi\|... - gi\|86152740\|ref\|ZP_01070945.1\| nrfi protein [Campylobacter jejuni subsp. jejuni HB93-13], gi\|8584362...	208.0	[0..5]	[270..777]
gi\|109671410 - gi\|109671410\|ref\|ZP_01373665.1\| hypothetical protein Ccon1_01001683 [Campylobacter concisus 13826]	208.0	[0..30]	[270..746]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVLFVATL LLYLAATVAY LAFLVKPREV LGKISRWVLT GGFVVHAVYT VDRYIEAGYT  60
   61 PITNLHESLS FFGLAIAGVY LIFERKYRTI ILGSFVTPLV LLILIGSTGF PS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AISPLNPALK SRWLAVHTVM AFLSYAAFAV AFGAAIMYLI QEHFLKSKKL GALYQKLPSL  60
   61 DVLDEINYRC LTLGFPLLTF AIISGAIWAE SAWGTYWSWD PKETWSLITW FVYAALLHGR 120
  121 LTTGWRGKKA AWLAIIGFFV LLFTFLGVNL FMSGLHSYT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits