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View Structure Prediction Details

Protein: gi|39998355, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998355, gi|....

Description E-value Query
Range
Subject
Range
gi|93209558 - gi|93209558|gb|ABE73459.2| dissimilatory sulfite reductase alpha subunit [Desulfomicrobium thermophi...
231.0 [0..6] [224..28]
gi|63029733 - gi|63029733|gb|AAY27759.1| dissimilatory sulfite reductase subunit A [uncultured sulfate-reducing ba...
230.0 [0..6] [224..29]
gi|88643064 - gi|88643064|gb|ABD46832.1| dissimilatory sulfite reductase alpha subunit [uncultured prokaryote]
228.0 [0..6] [224..28]
gi|88643248 - gi|88643248|gb|ABD46860.1| dissimilatory sulfite reductase alpha subunit [Desulfosalina propionicus]
228.0 [0..6] [224..28]
gi|116061971 - gi|116061971|dbj|BAF34617.1| dissimilatory sulfite reductase alpha subunit [Desulfovibrionales bacte...
226.0 [0..6] [224..28]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKDILEKGA ILQRDRETYA IAPHIPGGIT DTATLRKLCD VADKYGVKEL KLTSAQRIAL  60
   61 FGVKEEDLDA IWSDLDQQPG AAIGLCVRSV KICPGTTWCK RGVQDSVSLG LKIDAIYHAM 120
  121 ELPNKMKMGI SGCMLNCAET MLKDVGVVGT PKGWRIYVGG NAGARPRIGD LLVELGPDED 180
  181 KVLAVIADLV EWYRSSGSEQ RLGRVVEQMG FDAFKTAVLG AKATP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.0
Match: 2akjA
Description: Structure of spinach nitrite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
sulfite reductase (NADPH) activity 2.57457451461426 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.98717838495896 bayes_pls_golite062009
catalytic activity 1.77011790035856 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.00862920283225 bayes_pls_golite062009
oxidoreductase activity 0.529989085121014 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.0472795662331 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle