YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998149, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998149, gi|....

Description	E-value	Query Range	Subject Range
gi\|77997135, gi\|... - gi\|78045020\|ref\|YP_360811.1\| ferredoxin--NADP(+) reductase subunit alpha [Carboxydothermus hydrogeno...	248.0	[0..1]	[275..1]
gi\|255100567 - gi\|255100567\|ref\|ZP_05329544.1\| ferredoxin-NADP(+) reductase subunit alpha [Clostridium difficile QC... gi\|126699140, gi... - gi\|126699140\|ref\|YP_001088037.1\| ferredoxin--NADP(+) reductase subunit alpha [Clostridium difficile ... gi\|255306505 - gi\|255306505\|ref\|ZP_05350676.1\| ferredoxin-NADP(+) reductase subunit alpha [Clostridium difficile AT...	241.0	[0..3]	[275..4]
gi\|90574952, gi\|... - gi\|90574952\|ref\|ZP_01231441.1\| hypothetical protein CdifQ_02001603 [Clostridium difficile QCD-32g58]...	239.0	[0..3]	[275..9]
YADH_CLOBE - Uncharacterized protein in adh 3'region OS=Clostridium beijerinckii PE=3 SV=3	237.0	[0..1]	[275..1]
gi\|82726250, gi\|... - gi\|82745786\|ref\|ZP_00908296.1\| probable hydrogenase gamma chain [Clostridium beijerincki NCIMB 8052]... gi\|47778437 - gi\|47778437\|gb\|AAT38120.1\| putative electron-transfer protein [Clostridium beijerinckii]	236.0	[0..1]	[275..1]
gi\|110800611, gi... - gi\|110800611\|ref\|YP_695907.1\| ferredoxin--NADP(+) reductase subunit alpha [Clostridium perfringens A...	234.0	[0..1]	[275..1]
gi\|145220281, gi... - gi\|71482446\|ref\|ZP_00662136.1\| hydrogenase, putative [Prosthecochloris vibrioformis DSM 265], gi\|712...	234.0	[0..1]	[270..1]
gi\|18310237, gi\|... - gi\|18310237\|ref\|NP_562171.1\| ferredoxin--NADP(+) reductase subunit alpha [Clostridium perfringens st... gi\|170715350, gi... - gi\|170715350\|gb\|EDT27532.1\| oxidoreductase, NAD-binding [Clostridium perfringens CPE str. F4969], gi...	232.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDVISNEVL APNLHQLVVR APRIASSRLP GQFVIVRAEA GEERIPLTIG DADAAAGTIT  60
   61 LFVQAIGAST QRIVAVPAGG RLRDVAGPLG LPTHIRNWGR VACIGGGVGT AVLFPLAKAL 120
  121 AEAGNEVTTI IGGRSARYII LADELGALSR ELLVTTEDGS LGVQGFVTQP LEGLVADPAR 180
  181 RPGAVFAVGP VPMMRAVAEL TRPHGIETVV SLNPIMIDGT GMCGGCRVLV GGEAKFACVD 240
  241 GPEFDGHLVD FDNLADRLAT YRESEASHVC RVAGKEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1ep1B
Description:	Dihydroorotate dehydrogenase B, PyrK subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.82418089257266	bayes_pls_golite062009
oxidoreductase activity	1.06930052685144	bayes_pls_golite062009
dihydroorotate dehydrogenase activity	0.67910028759775	bayes_pls_golite062009
transferase activity	0.20565726169867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: