YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998143, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998143, gi|....

Description	E-value	Query Range	Subject Range
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	242.0	[0..1]	[238..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	241.0	[0..1]	[238..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	240.0	[0..1]	[238..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	240.0	[0..1]	[237..81]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	238.0	[0..1]	[237..1]
gi\|36785272, gi\|... - gi\|37525843\|ref\|NP_929187.1\| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdu...	236.0	[0..1]	[238..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	236.0	[0..1]	[238..1]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	235.0	[0..1]	[238..1]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	235.0	[0..1]	[238..1]
gi\|94731432, gi\|... - gi\|94987183\|ref\|YP_595116.1\| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1...	234.0	[0..1]	[238..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGIYSALS GNIAAMKRLD VLSNNLANVN TPGFKKDRMT FESLLQAAGK VPQAGTTDAP  60
   61 VYSETAFFTD HSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.823	0.038	bacterial-type flagellum	a.7.7	BAG domain

Predicted Domain #2

Region A:
Residues: [74-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVSQTGNTF DLAIDGDGFF VVNTPEGKAY TRQGNFKLDA TGKLVTADGY EVSGGGPIVI  60
   61 NGSRVEINAR GEILVDGSPV GTLEVVDFPK PYALQKNGNA LFVPTDPQAV PQPVQGEPVR 120
  121 QGYLELSNVS AIQEMVQLIE TQRFFEMCSK AVKAYDDMAG KAANEVGKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits