YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985038, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985038, gi|....

Description	E-value	Query Range	Subject Range
gi\|169347090, gi... - gi\|169347090\|ref\|ZP_02866032.1\| cobalt ABC transporter, permease protein [Clostridium perfringens C ... gi\|182381146, gi... - gi\|182381146\|gb\|EDT78625.1\| cobalt ABC transporter, permease protein [Clostridium perfringens NCTC 8... gi\|168211872, gi... - gi\|170710154\|gb\|EDT22336.1\| cobalt ABC transporter, permease protein [Clostridium perfringens B str.... gi\|18311354, gi\|... - gi\|18311354\|ref\|NP_563288.1\| hypothetical protein CPE2372 [Clostridium perfringens str. 13], gi\|1814... gi\|110674822, gi... - gi\|110800175\|ref\|YP_697061.1\| cobalt ABC transporter, permease protein [Clostridium perfringens ATCC...	167.0	[0..4]	[250..7]
gi\|110683556, gi... - gi\|110803055\|ref\|YP_699631.1\| ABC transporter permease protein [Clostridium perfringens SM101], gi\|1...	165.0	[0..4]	[250..7]
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	165.0	[0..3]	[251..5]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	164.0	[0..3]	[251..5]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	164.0	[0..3]	[250..6]
gi\|218901346, gi... - gi\|218901346\|ref\|YP_002449180.1\| cobalt transport protein [Bacillus cereus AH820], gi\|218535401\|gb\|A... gi\|30260332, gi\|... - gi\|30260332\|ref\|NP_842709.1\| cobalt transport protein [Bacillus anthracis str. Ames], gi\|30253653\|gb... gi\|47525397, gi\|... - gi\|47525397\|ref\|YP_016746.1\| cobalt transport protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|21398099 - ref\|NP_654084.1\| CbiQ, Cobalt transport protein [Bacillus anthracis str. A2012] gi\|225788254, gi... - gi\|225862193\|ref\|YP_002747571.1\| cobalt transport protein [Bacillus cereus 03BB102], gi\|225788254\|gb... gi\|118415134, gi... - gi\|118475909\|ref\|YP_893060.1\| cobalt ABC transporter, permease component [Bacillus thuringiensis str... gi\|227002880, gi... - gi\|227812814\|ref\|YP_002812823.1\| cobalt transport protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|254726280 - gi\|254726280\|ref\|ZP_05188062.1\| cobalt transport protein [Bacillus anthracis str. A1055] gi\|254735285 - gi\|254735285\|ref\|ZP_05192993.1\| cobalt transport protein [Bacillus anthracis str. Western North Amer... gi\|229603881, gi... - gi\|229603881\|ref\|YP_002864792.1\| cobalt transport protein [Bacillus anthracis str. A0248], gi\|229268... gi\|254686640 - gi\|254686640\|ref\|ZP_05150499.1\| cobalt transport protein [Bacillus anthracis str. CNEVA-9066] gi\|52145078, gi\|... - gi\|52145078\|ref\|YP_081751.1\| cobalt ABC transporter permease [Bacillus cereus E33L], gi\|51978547\|gb\|... gi\|254756840 - gi\|254756840\|ref\|ZP_05208868.1\| cobalt transport protein [Bacillus anthracis str. Australia 94] gi\|49183175, gi\|... - gi\|49183175\|ref\|YP_026427.1\| cobalt transport protein [Bacillus anthracis str. Sterne], gi\|49177102\|... gi\|254739477 - gi\|254739477\|ref\|ZP_05197175.1\| cobalt transport protein [Bacillus anthracis str. Kruger B] gi\|49481686, gi\|... - gi\|49481686\|ref\|YP_034492.1\| cobalt ABC transporter permease [Bacillus thuringiensis serovar konkuki... gi\|254755531 - gi\|254755531\|ref\|ZP_05207565.1\| cobalt transport protein [Bacillus anthracis str. Vollum] gi\|196041150, gi... - gi\|196041150\|ref\|ZP_03108446.1\| cobalt transport protein [Bacillus cereus NVH0597-99], gi\|196028085\|... gi\|196022927, gi... - gi\|196046182\|ref\|ZP_03113409.1\| cobalt transport protein [Bacillus cereus 03BB108], gi\|196022927\|gb\|... gi\|190567400, gi... - gi\|190567400\|ref\|ZP_03020314.1\| cobalt transport protein [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|196036006, gi... - gi\|196036006\|ref\|ZP_03103407.1\| cobalt transport protein [Bacillus cereus W], gi\|195991375\|gb\|EDX553... gi\|170125624, gi... - gi\|170709468\|ref\|ZP_02899871.1\| cobalt transport protein [Bacillus anthracis str. A0389], gi\|1701256... gi\|172079842, gi... - gi\|177656194\|ref\|ZP_02937175.1\| cobalt transport protein [Bacillus anthracis str. A0174], gi\|1720798... gi\|167642073, gi... - gi\|167642073\|ref\|ZP_02400297.1\| cobalt transport protein [Bacillus anthracis str. A0193], gi\|1675099... gi\|170689679, gi... - gi\|170689679\|ref\|ZP_02880857.1\| cobalt transport protein [Bacillus anthracis str. A0465], gi\|1706663... gi\|164710914, gi... - gi\|165873346\|ref\|ZP_02217947.1\| cobalt transport protein [Bacillus anthracis str. A0488], gi\|1647109...	164.0	[0..3]	[251..5]
gi\|25308387 - pir\|\|E97281 probable permease (Cobalt permease subfamily) [imported] - Clostridium acetobutylicum gi\|15896351, gi\|... - gi\|15896351\|ref\|NP_349700.1\| cobalt subfamily permease [Clostridium acetobutylicum ATCC 824], gi\|150...	163.0	[0..4]	[241..7]
gi\|65317586 - gi\|65317586\|ref\|ZP_00390545.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ an...	162.0	[0..3]	[251..2]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	162.0	[0..3]	[251..5]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	162.0	[0..3]	[247..6]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHVLSASPA DHPLSRLDPR VKLLTAGALL AMVISCTGGL FPLLAAILSL GIVVSLGVPL  60
   61 RLILLRFAEP AFIAAVVLLL KLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSGVTPLFTL QLPWLELTAY REGLREGLLI AGRIAAAVSV VSAVGFSSSF TDLMAALAWL  60
   61 RVPRSFIEVA LFAWRYLFLL LDDAQVIHAA QRNRLGYSGL RRGMRSFGTL AGALVLKAFD 120
  121 NSQTITTAMV QRGYDGNLPL FRHRPFRPAE VALSALFVVA MGTLWGMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits