YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997813, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997813, gi|....

Description	E-value	Query Range	Subject Range
gi\|13366096 - gi\|13366096\|dbj\|BAB39386.1\| bidirectional hydrogenase small subunit [Anabaena variabilis]	187.0	[0..20]	[195..1]
gi\|1032479 - gi\|1032479\|emb\|CAA55876.1\| hydrogenase small subunit [Anabaena variabilis ATCC 29413] gi\|2126557 - pir\|\|I39733 hydrogenase small chain - Anabaena variabilis	186.0	[0..8]	[195..13]
gi\|46981403 - gi\|46981403\|gb\|AAT07677.1\| bidirectional hydrogenase small subunit [Lyngbya majuscula CCAP 1446/4]	186.0	[0..20]	[195..1]
gi\|106889666, gi... - gi\|148657643\|ref\|YP_001277848.1\| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-...	184.0	[0..20]	[195..1]
gi\|25529722 - pir\|\|AB1902 hydrogenase small chain [imported] - Nostoc sp. (strain PCC 7120) gi\|17130109, gi\|... - gi\|17228259\|ref\|NP_484807.1\| hydrogenase small subunit [Nostoc sp. PCC 7120], gi\|17130109\|dbj\|BAB727...	184.0	[0..20]	[195..1]
gi\|67157881, gi\|... - gi\|67157881\|ref\|ZP_00419026.1\| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway ... MBHS_AZOVI - Uptake hydrogenase small subunit OS=Azotobacter vinelandii GN=hoxK PE=1 SV=1	183.0	[0..2]	[195..29]
gi\|124260787, gi... - gi\|124268012\|ref\|YP_001022016.1\| hydrogenase (acceptor) [Methylibium petroleiphilum PM1], gi\|1242607... gi\|47573671 - gi\|47573671\|ref\|ZP_00243709.1\| COG1740: Ni,Fe-hydrogenase I small subunit [Rubrivivax gelatinosus PM...	183.0	[0..2]	[194..26]
gi\|77993215 - gi\|77993215\|dbj\|BAE46795.1\| bidirectional hydrogenase Y subunit [Nostoc sp. PCC 7422]	183.0	[0..20]	[195..1]
gi\|53730013, gi\|... - gi\|71906620\|ref\|YP_284207.1\| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas aromatica...	181.0	[0..20]	[194..4]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSGGITRG APGGMELIGS GRLRLATVWL GGCSGCHMSF LDLDEYLLEL SQAADLVYGP  60
   61 FVDAKEFPAG VDVALVEGAV TNRANLAMAG IIRQRSRTVI SFGDCAITGN VTAMRNLLTV 120
  121 AETLDPFRCD GEASPAFDYA AVPQLLPRAL PLHQVIPVDG YIPGCPPGPD RIRAAIECML 180
  181 RGEPVHLAPG MLTFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.221849
Match:	1h2aS
Description:	Nickel-iron hydrogenase, small subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.78400897294986	bayes_pls_golite062009
oxidoreductase activity	0.798908065150534	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: