YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984540, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984540, gi|....

Description	E-value	Query Range	Subject Range
gi\|87312171, gi\|... - gi\|87312171\|ref\|ZP_01094274.1\| dolichol-phosphate mannosyltransferase [Blastopirellula marina DSM 36...	182.0	[0..1]	[223..1]
gi\|2984166, gi\|1... - gi\|2984166\|gb\|AAC07699.1\| dolichol-phosphate mannosyltransferase [Aquifex aeolicus VF5], gi\|15606924... gi\|7446791 - pir\|\|G70463 dolichol-phosphate mannosyltransferase - Aquifex aeolicus	176.0	[0..3]	[232..2]
gi\|78170683, gi\|... - gi\|78188484\|ref\|YP_378822.1\| glycosyl transferase [Chlorobium chlorochromatii CaD3], gi\|78170683\|gb\|...	174.0	[0..3]	[229..8]
gi\|78166219, gi\|... - gi\|78186317\|ref\|YP_374360.1\| glycosyl transferase [Pelodictyon luteolum DSM 273], gi\|78166219\|gb\|ABB...	172.0	[0..3]	[229..4]
gi\|27887237, gi\|... - gi\|34763103\|ref\|ZP_00144074.1\| Dolichol-phosphate mannosyltransferase [Fusobacterium nucleatum subsp...	171.0	[0..2]	[235..3]
gi\|78356639, gi\|... - gi\|78356639\|ref\|YP_388088.1\| glycosyl transferase, group 2 family protein [Desulfovibrio desulfurica...	170.0	[0..3]	[236..7]
gi\|77918875, gi\|... - gi\|77918875\|ref\|YP_356690.1\| glycosyltransferase [Pelobacter carbinolicus DSM 2380], gi\|77544958\|gb\|...	169.0	[0..2]	[234..3]
gi\|110603460, gi... - gi\|126178154\|ref\|YP_001046119.1\| glycosyl transferase family protein [Methanoculleus marisnigri JR1]...	169.0	[0..1]	[229..3]
gi\|189347256, gi... - gi\|67918696\|ref\|ZP_00512291.1\| Glycosyl transferase, family 2 [Chlorobium limicola DSM 245], gi\|6778...	169.0	[0..3]	[229..6]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISFVIPVH NEQDNLLPLF DEITRMADAE RYEYEIIFVD DGSRDNSLQV LKSLARGCPA  60
   61 VRYLSLAANR GQSAALGVGF AHAAGDVIIT MDADGQNDPA DVPAMMARYG EGCDMVTGWR 120
  121 RNRRDTLSKR VGSRIGNGIR NRLTGESIHD TGCSLKVMRA DMVKRIKMFK GMHRFLPTLM 180
  181 RMEGARVVEM EVNHRPRRHG TSNYTNWRRA REGFFDLLAV RWMQRRYQPA TIGEKHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits