YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984351, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984351, gi|....

Description	E-value	Query Range	Subject Range
gi\|114772202, gi... - gi\|114772202\|ref\|ZP_01449582.1\| mannose-1-phosphate guanylyltransferase [alpha proteobacterium HTCC2... gi\|114772202 - gi\|114772202\|ref\|ZP_01449582.1\| mannose-1-phosphate guanylyltransferase [alpha proteobacterium HTCC2... gi\|221134314 - gi\|221134314\|ref\|ZP_03560619.1\| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomeras...	158.0	[0..2]	[115..353]
gi\|63054920 - gi\|63054920\|gb\|AAY28997.1\| phosphomannose isomerase/GDP-mannose pyrophosphorylase [Stenotrophomonas ...	154.0	[0..3]	[116..355]
gi\|77381179, gi\|... - gi\|77457176\|ref\|YP_346681.1\| mannose-1-phosphate guanylyltransferase (GDP) [Pseudomonas fluorescens ...	153.0	[0..2]	[125..356]
gi\|82406784, gi\|... - gi\|82495281\|ref\|ZP_00880858.1\| Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase...	152.0	[0..3]	[116..357]
gi\|88860043, gi\|... - gi\|88860043\|ref\|ZP_01134682.1\| mannose-1-phosphate guanylyltransferase [Pseudoalteromonas tunicata D...	152.0	[0..3]	[115..374]
ALGA_PSEAE - Alginate biosynthesis protein AlgA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 10... gi\|218770445, gi... - gi\|218890222\|ref\|YP_002439086.1\| phosphomannose isomerase / guanosine 5'-diphospho-D-mannose pyropho... gi\|116051549, gi... - gi\|46164295\|ref\|ZP_00136936.2\| COG0836: Mannose-1-phosphate guanylyltransferase [Pseudomonas aerugin... gi\|107103063 - gi\|107103063\|ref\|ZP_01366981.1\| hypothetical protein PaerPA_01004132 [Pseudomonas aeruginosa PACS2] gi\|194547457, gi... - gi\|84319694\|ref\|ZP_00968085.1\| COG0836: Mannose-1-phosphate guanylyltransferase [Pseudomonas aerugin... gi\|126195632, gi... - gi\|84325865\|ref\|ZP_00973897.1\| COG0836: Mannose-1-phosphate guanylyltransferase [Pseudomonas aerugin... ALGA_PSEAE - Alginate biosynthesis protein algA OS=Pseudomonas aeruginosa GN=algA PE=1 SV=3	151.0	[0..2]	[124..356]
gi\|187479108, gi... - gi\|187479108\|ref\|YP_787133.1\| capsular polysaccharide biosynthesis protein [includes: mannose-6-phos...	151.0	[0..3]	[114..361]
gi\|89899522, gi\|... - gi\|89899522\|ref\|YP_521993.1\| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [...	151.0	[0..3]	[114..384]
tr\|I7BBY9\|I7BBY9... - Mannose-1-phosphate guanylyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3156 PE=3 SV=1 ALGA_PSEPK - Alginate biosynthesis protein AlgA OS=Pseudomonas putida (strain KT2440) GN=algA PE=3 SV=1 gi\|148549650, gi... - gi\|82737908\|ref\|ZP_00900751.1\| Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase... tr\|E4R4S6\|E4R4S6... - AlgA OS=Pseudomonas putida (strain BIRD-1) GN=algA PE=3 SV=1	151.0	[0..2]	[121..357]
ALGA_PSEFL - Alginate biosynthesis protein AlgA OS=Pseudomonas fluorescens GN=algA PE=3 SV=1 gi\|229588521, gi... - gi\|229588521\|ref\|YP_002870640.1\| alginate biosynthesis protein [Pseudomonas fluorescens SBW25], gi\|2...	151.0	[0..2]	[125..356]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELERGERPW GTYTVLEENK NYKIKRIEVK PGQRLSLQMH HHRSEHWIVV SGTARVTCGD  60
   61 DEYTVNVNES TFIPIGRNHR LENPGKIPLV IIEVQSGEYL GEDDIIRFDD DYHRCEAAAA 120
  121 TCAEEEGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2et7A
Description:	Structural and spectroscopic insights into the mechanism of oxalate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.77242843392921	bayes_pls_golite062009
isomerase activity	0.02840080734269	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.0171526559251101	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: