YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHA_GEOSL.

Description	E-value	Query Range	Subject Range
GMHA_GEODF - Phosphoheptose isomerase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=gmhA PE=3 ...	171.0	[0..1]	[188..1]
gi\|88596203, gi\|... - gi\|88596203\|ref\|ZP_01099440.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni 84-25], ... GMHA1_CAMJE - Phosphoheptose isomerase 1 OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / ... GMHA1_CAMJE, GHA... - Phosphoheptose isomerase 1 OS=Campylobacter jejuni GN=gmhA1 PE=1 SV=1, (Q9PNE6) Phosphoheptose isome...	164.0	[0..1]	[187..1]
gi\|112805305, gi... - gi\|153951000\|ref\|YP_001397748.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. doylei 269.97...	164.0	[0..1]	[187..1]
gi\|86152528, gi\|... - gi\|86152528\|ref\|ZP_01070733.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni HB93-13]... gi\|41058387 - gi\|41058387\|gb\|AAR99164.1\| putative phosphoheptose isomerase1 [Campylobacter jejuni]	164.0	[0..1]	[187..1]
gi\|86150345, gi\|... - gi\|86150345\|ref\|ZP_01068571.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni CF93-6],...	163.0	[0..1]	[185..1]
GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes GN=gmhA PE=3 SV=1 GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 1...	163.0	[0..1]	[186..1]
gi\|40217913 - gi\|40217913\|gb\|AAR82882.1\| putative phosphoheptose isomerase 1 [Campylobacter jejuni]	163.0	[0..1]	[187..1]
GMHA_ANETH - Phosphoheptose isomerase OS=Aneurinibacillus thermoaerophilus GN=gmhA PE=3 SV=1	162.0	[0..1]	[188..1]
gi\|40218031 - gi\|40218031\|gb\|AAR82940.1\| Gmh [Campylobacter jejuni] gi\|167005738, gi... - gi\|87305877\|ref\|ZP_01088030.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni 81-176],...	162.0	[0..1]	[185..1]
gi\|85842071, gi\|... - gi\|86150901\|ref\|ZP_01069117.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni 260.94],...	162.0	[0..1]	[187..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDDITAQLR AGRQVLEALE RELAGRIASF AELLADSLAG GRKLLVMGNG GSAADAQHFA  60
   61 AEIVGRFKLE RRGLPAVALT TDTSILTAIG NDYGFDAIFR RQVEALADEG DVVVGISTSG 120
  121 NSRNVQEALL LARERGCRTI GLLGRDGGSI RDIVDLDLTV PSADTPRIQE GHITIIHIVC 180
  181 DLVEKRLFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1tk9A
Description:	Crystal Structure of Phosphoheptose isomerase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	4.22038446205301	bayes_pls_golite062009
catalytic activity	1.89824366260041	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.44949513607659	bayes_pls_golite062009
isomerase activity	1.38908530446706	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.324808220726	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.29799137917321	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.82349592171096	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.15645319812963	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: