YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997118, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997118, gi|....

Description	E-value	Query Range	Subject Range
gi\|229350205, gi... - gi\|229512695\|ref\|ZP_04402163.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229346649, gi... - gi\|229516223\|ref\|ZP_04405671.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|227116705, gi... - gi\|227116705\|ref\|YP_002818601.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho... gi\|229506906, gi... - gi\|229506906\|ref\|ZP_04396414.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229335216, gi... - gi\|229527208\|ref\|ZP_04416601.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229369074, gi... - gi\|229606419\|ref\|YP_002877067.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio c... gi\|121729646, gi... - gi\|121729646\|ref\|ZP_01682123.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|229341869, gi... - gi\|229520984\|ref\|ZP_04410405.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229524744, gi... - gi\|229524744\|ref\|ZP_04414149.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229509279, gi... - gi\|229509279\|ref\|ZP_04398762.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|254851431, gi... - gi\|254851431\|ref\|ZP_05240781.1\| acetyl-CoA carboxylase [Vibrio cholerae MO10], gi\|254847136\|gb\|EET25... gi\|9654707, gi\|1... - gi\|9654707\|gb\|AAF93470.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cholerae O... gi\|11354377 - pir\|\|G82341 acetyl-CoA carboxylase, biotin carboxyl carrier protein VC0296 [imported] - Vibrio chole... gi\|254286232, gi... - gi\|254286232\|ref\|ZP_04961191.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|148873102, gi... - gi\|153831417\|ref\|ZP_01984084.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|153827378, gi... - gi\|153827378\|ref\|ZP_01980045.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|227080510, gi... - gi\|227080510\|ref\|YP_002809061.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho...	142.0	[0..1]	[156..44]
gi\|75228621 - gi\|75228621\|ref\|ZP_00715246.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli B7A]	141.0	[0..1]	[156..1]
gi\|36787357, gi\|... - gi\|37527921\|ref\|NP_931266.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Photorh...	139.0	[0..1]	[156..1]
gi\|83573282, gi\|... - gi\|83590368\|ref\|YP_430377.1\| pyruvate carboxylase subunit B [Moorella thermoacetica ATCC 39073], gi\|...	139.0	[0..1]	[157..495]
gi\|53753288, gi\|... - gi\|54293456\|ref\|YP_125871.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	138.0	[0..1]	[156..1]
gi\|53750283, gi\|... - gi\|54296498\|ref\|YP_122867.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	138.0	[0..1]	[156..1]
gi\|52840708, gi\|... - gi\|52840708\|ref\|YP_094507.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	138.0	[0..1]	[156..1]
gi\|189345748, gi... - gi\|67919169\|ref\|ZP_00512754.1\| Acetyl-CoA biotin carboxyl carrier [Chlorobium limicola DSM 245], gi\|...	137.0	[0..1]	[157..1]
gi\|82778564, gi\|... - gi\|82778564\|ref\|YP_404913.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell...	136.0	[0..1]	[156..1]
gi\|254795198, gi... - gi\|254795198\|ref\|YP_003080035.1\| acetyl CoA carboxylase, BCCP subunit [Escherichia coli O157:H7 str.... gi\|253975091, gi... - gi\|254163190\|ref\|YP_003046298.1\| acetyl-CoA carboxylase [Escherichia coli B str. REL606], gi\|2539750... gi\|226840042, gi... - gi\|254038418\|ref\|ZP_04872476.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esch... gi\|115514661, gi... - gi\|117625537\|ref\|YP_858860.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Escher... gi\|254289940, gi... - gi\|254289940\|ref\|YP_003055688.1\| acetyl-CoA carboxylase [Escherichia coli BL21(DE3)], gi\|253979247\|g... gi\|124528529, gi... - gi\|124528529\|ref\|ZP_01699818.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia... gi\|251786516, gi... - gi\|251786516\|ref\|YP_003000820.1\| hypothetical protein B21_03064 [Escherichia coli BL21], gi\|24237878... gi\|238902354, gi... - gi\|238902354\|ref\|YP_002928150.1\| acetyl CoA carboxylase, BCCP subunit [Escherichia coli BW2952], gi\|... EG10275 - acetyl CoA carboxylase, BCCP subunit / Acetyl-CoA carboxylase, biotin carboxyl carrier protein; BCCP... gi\|237705997, gi... - gi\|237705997\|ref\|ZP_04536478.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esch... gi\|227835368, gi... - gi\|227887972\|ref\|ZP_04005777.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esch... gi\|218362587, gi... - gi\|218555819\|ref\|YP_002388732.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|218560317, gi... - gi\|218560317\|ref\|YP_002393230.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|218429102, gi... - gi\|218691538\|ref\|YP_002399750.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|218696954, gi... - gi\|218696954\|ref\|YP_002404621.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|218702020, gi... - gi\|218702020\|ref\|YP_002409649.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|218433966, gi... - gi\|218706869\|ref\|YP_002414388.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|208727764, gi... - gi\|208807963\|ref\|ZP_03250300.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia... gi\|208735179, gi... - gi\|208813902\|ref\|ZP_03255231.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia... gi\|208740167, gi... - gi\|208820044\|ref\|ZP_03260364.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia... gi\|209400000, gi... - gi\|209400000\|ref\|YP_002272717.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichi... gi\|209920727, gi... - gi\|209920727\|ref\|YP_002294811.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|215266634, gi... - gi\|215488562\|ref\|YP_002330993.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... BCCP_ECOLI - Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) - Escherichia coli gi\|217319433, gi... - gi\|217327066\|ref\|ZP_03443149.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia... gi\|218550539, gi... - gi\|218550539\|ref\|YP_002384330.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... BCCP_SHIFL - Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Shigella flexneri GN=accB PE=3 SV=1 gi\|24053732, gi\|... - gi\|24114540\|ref\|NP_709050.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell... gi\|91074251, gi\|... - gi\|91212677\|ref\|YP_542663.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Escheri... BCCP_ECOL6 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O6:H1 (strain CFT073 /... gi\|15833381, gi\|... - gi\|15833381\|ref\|NP_312154.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Escheri... gi\|30064586, gi\|... - gi\|30064586\|ref\|NP_838757.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell... gi\|110345083, gi... - gi\|110643491\|ref\|YP_671221.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Escher... BCCP_ECO57 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O157:H7 GN=accB PE=3 S... EG10275 - acetyl CoA carboxylase, BCCP subunit / Acetyl-CoA carboxylase, biotin carboxyl carrier protein; BCCP... gi\|15803789, gi\|... - gi\|15803789\|ref\|NP_289823.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Escheri... gi\|110616663, gi... - gi\|110807115\|ref\|YP_690635.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigel... BCCP_ECOL6 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O6 GN=accB PE=3 SV=1 gi\|188013627, gi... - gi\|188013627\|gb\|EDU51749.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia col... gi\|168758929, gi... - gi\|189354349\|gb\|EDU72768.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia col... gi\|168769115, gi... - gi\|189361776\|gb\|EDU80195.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia col... gi\|168778141, gi... - gi\|187766811\|gb\|EDU30655.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia col... gi\|189373812, gi... - gi\|189373812\|gb\|EDU92228.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichia col... gi\|170018502, gi... - gi\|170018502\|ref\|YP_001723456.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Esc... gi\|169890618, gi... - gi\|170082783\|ref\|YP_001732103.1\| acetyl CoA carboxylase, BCCP subunit [Escherichia coli str. K-12 su... gi\|170518045, gi... - gi\|170680327\|ref\|YP_001745526.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Escherichi... gi\|73857261, gi\|... - gi\|74313784\|ref\|YP_312203.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell... gi\|82545516, gi\|... - gi\|82545516\|ref\|YP_409463.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell... gi\|75254957 - gi\|75254957\|ref\|ZP_00726901.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli E22] gi\|188487851, gi... - gi\|75511200\|ref\|ZP_00733907.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli 53638], gi... gi\|89110015, gi\|... - gi\|89110015\|ref\|AP_003795.1\| acetyl CoA carboxylase, BCCP subunit [Escherichia coli str. K-12 substr... gi\|83584497, gi\|... - gi\|83584497\|ref\|ZP_00923177.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli 101-1], gi... gi\|187430602, gi... - gi\|75178763\|ref\|ZP_00698799.1\| COG0511: Biotin carboxyl carrier protein [Shigella boydii BS512], gi\|... gi\|75214493, gi\|... - gi\|75214493\|ref\|ZP_00713070.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli E110019], ... gi\|190905888, gi... - gi\|75237892\|ref\|ZP_00721903.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli F11], gi\|1... gi\|157080072, gi... - gi\|75188053\|ref\|ZP_00701320.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli E24377A], ... gi\|157162735, gi... - gi\|75197197\|ref\|ZP_00707267.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli HS], gi\|15...	136.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKDLKSLI KMVTETDITE FELEGAEEKI RIKRGCTPQV VQYQAPAPMM AVPQPIAAPV  60
   61 AAAAPAPAAV SAAAPAVAGG KEVTSPIVGT FYRAPAPDAA PYVEVGQVVE KGQVLCIVEA 120
  121 MKLMNEIEAE FRCKIVQICK ENAQPVEFGE PLFIVEPM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1a6xA
Description:	STRUCTURE OF THE APO-BIOTIN CARBOXYL CARRIER PROTEIN (APO-BCCP87) OF ESCHERICHIA COLI ACETYL-COA CARBOXYLASE, NMR, 49 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.7856398099075	bayes_pls_golite062009
CoA carboxylase activity	10.0090741810507	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	9.84466409837462	bayes_pls_golite062009
ligase activity	5.03219018024593	bayes_pls_golite062009
catalytic activity	1.39099902011318	bayes_pls_golite062009
dihydrolipoyllysine-residue acetyltransferase activity	0.77123283777817	bayes_pls_golite062009
S-acetyltransferase activity	0.62484336481352	bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity	0.61155119443764	bayes_pls_golite062009
S-acyltransferase activity	0.14278235106683	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: