YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD_GEOSL.

Description	E-value	Query Range	Subject Range
PSD_BURVG - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=...	239.0	[0..1]	[217..1]
gi\|170136955, gi... - gi\|170698097\|ref\|ZP_02889177.1\| phosphatidylserine decarboxylase related protein [Burkholderia ambif... gi\|171316290, gi... - gi\|171316290\|ref\|ZP_02905511.1\| phosphatidylserine decarboxylase related protein [Burkholderia ambif... PSD_BURCM - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN... PSD_BURA4 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia ambifaria (strain MC40-6) GN=psd PE=3 SV=...	239.0	[0..1]	[217..1]
PSD_BURCH - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia cenocepacia (strain HI2424) GN=psd PE=3 S... gi\|194558631, gi... - gi\|84355250\|ref\|ZP_00980138.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia cenocepacia P... PSD_BURCA - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia cenocepacia (strain AU 1054) GN=psd PE=3 ... PSD_BURCC - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia cenocepacia (strain MC0-3) GN=psd PE=3 SV...	238.0	[0..1]	[217..1]
PSD_BURL3 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCI... PSD_BURS3 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia sp. (strain 383) GN=psd PE=3 SV=1	237.0	[0..1]	[217..1]
PSD_BURTA - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia thailandensis (strain E264 / ATCC 700388 ... gi\|167618519 - gi\|167618519\|ref\|ZP_02387150.1\| phosphatidylserine decarboxylase [Burkholderia thailandensis Bt4] gi\|167580409 - gi\|167580409\|ref\|ZP_02373283.1\| phosphatidylserine decarboxylase [Burkholderia thailandensis TXDOH]	236.0	[0..1]	[218..1]
gi\|167737837 - gi\|167737837\|ref\|ZP_02410611.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 14] gi\|167815022 - gi\|167815022\|ref\|ZP_02446702.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 91] gi\|167718830 - gi\|167718830\|ref\|ZP_02402066.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei DM98] gi\|167893531 - gi\|167893531\|ref\|ZP_02480933.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 7894] gi\|134283889, gi... - gi\|134283889\|ref\|ZP_01770585.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 305], gi... gi\|167901979 - gi\|167901979\|ref\|ZP_02489184.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei NCTC 131... gi\|167823439 - gi\|167823439\|ref\|ZP_02454910.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 9] gi\|167844988 - gi\|167844988\|ref\|ZP_02470496.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei B7210] PSD_BURP1 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 1710b) GN=psd PE=3 S... gi\|237504642, gi... - gi\|237811569\|ref\|YP_002896020.1\| putative phosphatidylserine decarboxylase homolog [Burkholderia pse... PSD_BURPS - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei GN=psd PE=3 SV=1 PSD_BURPS - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain K96243) GN=psd PE=3 ... gi\|83678364, gi\|... - gi\|83678364\|ref\|ZP_00940092.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|99909806, gi\|... - gi\|99909806\|ref\|ZP_01316917.1\| hypothetical protein Bpse1_03003736 [Burkholderia pseudomallei 1655],... PSD_BURP0 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 1106a) GN=psd PE=3 S... gi\|161357453, gi... - gi\|82536005\|ref\|ZP_00895015.1\| hypothetical protein Bpse110_02002704 [Burkholderia pseudomallei 1106... gi\|254190563, gi... - gi\|67754604\|ref\|ZP_00493510.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|67761478, gi\|... - gi\|67761478\|ref\|ZP_00500187.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|67683899, gi\|... - gi\|90291922\|ref\|ZP_01211541.1\| hypothetical protein Bpse17_02003391 [Burkholderia pseudomallei 1710a... PSD_BURP6 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 668) GN=psd PE=3 SV=... gi\|167910213 - gi\|167910213\|ref\|ZP_02497304.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 112] gi\|167918245 - gi\|167918245\|ref\|ZP_02505336.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei BCC215]	236.0	[0..1]	[218..1]
gi\|194562835, gi... - gi\|84362388\|ref\|ZP_00987014.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia dolosa AUO158...	235.0	[0..1]	[217..1]
PSD_BURM7 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia mallei (strain NCTC 10247) GN=psd PE=3 SV... PSD_BURMS - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia mallei (strain SAVP1) GN=psd PE=3 SV=1 gi\|85065192 - gi\|85065192\|ref\|ZP_01026045.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia mallei 10229] gi\|100263954, gi... - gi\|87314824\|ref\|ZP_01095862.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia mallei 200272... PSD_BURMA - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia mallei (strain ATCC 23344) GN=psd PE=3 SV... PSD_BURMA - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia mallei GN=psd PE=3 SV=1 gi\|83620250 - gi\|83620250\|ref\|ZP_00930672.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia mallei FMH] gi\|83623834, gi\|... - gi\|83623834\|ref\|ZP_00934095.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia mallei JHU], ... gi\|67636171, gi\|... - gi\|67636171\|ref\|ZP_00435119.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia mallei 10399]... gi\|167000380 - gi\|167000380\|ref\|ZP_02266198.1\| phosphatidylserine decarboxylase [Burkholderia mallei PRL-20] gi\|238523303, gi... - gi\|67642206\|ref\|ZP_00440966.1\| phosphatidylserine decarboxylase family protein [Burkholderia mallei ...	235.0	[0..1]	[218..1]
PSD_BURXL - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia xenovorans (strain LB400) GN=psd PE=3 SV=...	234.0	[0..1]	[217..1]
PSD_NITEC - Phosphatidylserine decarboxylase proenzyme OS=Nitrosomonas eutropha (strain C91) GN=psd PE=3 SV=1	233.0	[0..3]	[217..6]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNENTPIAV EGYPFIAIAG VLTLILAAVS WHAPVVWAGT AFFLTVTLFV AFFFRNPERI  60
   61 TPGNENAVVA PADGVVIYLG PAREEHLGVE TTKISIFMSV FNVHINRAPV SGTVLDTFYV 120
  121 KGKFLDVRDD RATFENEQAG LVIETARGLR LAVVQVAGLI ARRIVCYAGK GDRLTRGGRY 180
  181 GLIRFGSRLD IYLPTTTEVK VALGEKTVAG ETVLGILP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.15
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: